GCF_900047005.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NZ_FEEQ01000001.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1.1	T3PKS	1	22,176
Region 1.2	lanthipeptide-class-ii	214,203	237,193

NZ_FEEQ01000004.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 4.1	lanthipeptide-class-i	96,469	120,645

NZ_FEEQ01000007.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 7.1	terpene-precursor	1	18,024

NZ_FEEQ01000014.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 14.1	RiPP-like	20,084	33,182

NZ_FEEQ01000018.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 18.1	RiPP-like	17,014	27,880

NZ_FEEQ01000029.1 (Streptococcus pneumoniae)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 29.1	RiPP-like	1	5,337

Region	Type	From	To	Most similar known cluster
Region 1.1	T3PKS	1	22,176
Region 1.2	lanthipeptide-class-ii	214,203	237,193
Region 4.1	lanthipeptide-class-i	96,469	120,645
Region 7.1	terpene-precursor	1	18,024
Region 14.1	RiPP-like	20,084	33,182
Region 18.1	RiPP-like	17,014	27,880
Region 29.1	RiPP-like	1	5,337

No secondary metabolite regions were found in these records:: NZ_FEEQ01000002.1 (Streptococcus pneumoniae); NZ_FEEQ01000003.1 (Streptococcus pneumoniae); NZ_FEEQ01000005.1 (Streptococcus pneumoniae); NZ_FEEQ01000006.1 (Streptococcus pneumoniae); NZ_FEEQ01000008.1 (Streptococcus pneumoniae); NZ_FEEQ01000009.1 (Streptococcus pneumoniae); NZ_FEEQ01000010.1 (Streptococcus pneumoniae); NZ_FEEQ01000011.1 (Streptococcus pneumoniae); NZ_FEEQ01000012.1 (Streptococcus pneumoniae); NZ_FEEQ01000013.1 (Streptococcus pneumoniae); NZ_FEEQ01000015.1 (Streptococcus pneumoniae); NZ_FEEQ01000016.1 (Streptococcus pneumoniae); NZ_FEEQ01000017.1 (Streptococcus pneumoniae); NZ_FEEQ01000019.1 (Streptococcus pneumoniae); NZ_FEEQ01000020.1 (Streptococcus pneumoniae); NZ_FEEQ01000021.1 (Streptococcus pneumoniae); NZ_FEEQ01000022.1 (Streptococcus pneumoniae); NZ_FEEQ01000023.1 (Streptococcus pneumoniae); NZ_FEEQ01000024.1 (Streptococcus pneumoniae); NZ_FEEQ01000025.1 (Streptococcus pneumoniae); NZ_FEEQ01000026.1 (Streptococcus pneumoniae); NZ_FEEQ01000027.1 (Streptococcus pneumoniae); NZ_FEEQ01000028.1 (Streptococcus pneumoniae); NZ_FEEQ01000030.1 (Streptococcus pneumoniae); NZ_FEEQ01000031.1 (Streptococcus pneumoniae); NZ_FEEQ01000032.1 (Streptococcus pneumoniae); NZ_FEEQ01000033.1 (Streptococcus pneumoniae); NZ_FEEQ01000034.1 (Streptococcus pneumoniae); NZ_FEEQ01000035.1 (Streptococcus pneumoniae); NZ_FEEQ01000036.1 (Streptococcus pneumoniae); NZ_FEEQ01000037.1 (Streptococcus pneumoniae); NZ_FEEQ01000038.1 (Streptococcus pneumoniae)

Compact view

NZ_FEEQ01000001.1 - Region 1 - T3PKS

Download region GenBank file

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Location: 1 - 22,176 nt. (total: 22,176 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: reductase

A1T31_RS00025: hydroxymethylglutaryl-CoA reductase

smcogs: SMCOG1187: hydroxymethylglutaryl-CoA reductase

Transferases: phosphotransferase

A1T31_RS00045: Glucose-specific phosphotransferase enzyme IIA

smcogs: SMCOG1145: Glucose-specific phosphotransferase enzyme IIA

Ligases: synthase

A1T31_RS00020: hydroxymethylglutaryl-CoA synthase

smcogs: SMCOG1043: hydroxymethylglutaryl-CoA synthase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002700.2	0.41	ribosomal	bacinapeptin	Bacillus nakamurai
BGC0000519.4	0.41	ribosomal	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000486.4	0.41	ribosomal	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0002561.3	0.40	other (other)	phenazine SA, phenazine SB, phenazine SC	Streptomyces sp.
BGC0000592.5	0.40	ribosomal	microviridin B	Microcystis aeruginosa NIES-298
BGC0000616.4	0.40	ribosomal	amylocyclicin	Bacillus velezensis FZB42
BGC0000205.3	0.40	PKS	bryostatin	Candidatus Endobugula sertula
BGC0001743.3	0.39	ribosomal	plantaricyclin	Lactobacillus plantarum
BGC0001928.2	0.39	other (other)	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002700.2	0.41	ribosomal	bacinapeptin	Bacillus nakamurai
BGC0000519.4	0.41	ribosomal	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000486.4	0.41	ribosomal	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0002561.3	0.40	other (other)	phenazine SA, phenazine SB, phenazine SC	Streptomyces sp.
BGC0000592.5	0.40	ribosomal	microviridin B	Microcystis aeruginosa NIES-298
BGC0000616.4	0.40	ribosomal	amylocyclicin	Bacillus velezensis FZB42
BGC0000205.3	0.40	PKS	bryostatin	Candidatus Endobugula sertula
BGC0001743.3	0.39	ribosomal	plantaricyclin	Lactobacillus plantarum
BGC0001928.2	0.39	other (other)	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

ColR

Description: Phenol-responsive regulator
Species: Pseudomonas putida KT2440
Score: 23.40 out of 30.25

Confidence: medium

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 21.76 out of 27.78

Confidence: medium

CcpA

Description: Catabolite control protein A
Species: Streptococcus & Clostridium sp.
Score: 19.14 out of 20.97

Confidence: strong

Additional weak hits (3):

RicR

Description: Copper-responsive regulator
Species: Mycobacterium tuberculosis H37Rv
Score: 22.07 out of 32.93

Confidence: weak

CopR

Description: Copper-responsive regulator
Species: Lactococcus lactis subsp. lactis Il1403
Score: 23.25 out of 30.97

Confidence: weak

LuxO

Description: Repressor of luminescence
Species: Vibrio campbellii ATCC BAA-1116
Score: 21.78 out of 26.12

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
CcpA	Catabolite control protein A
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria
ColR	Phenol-responsive regulator

NZ_FEEQ01000001.1 - Region 2 - lanthipeptide-class-ii

Download region GenBank file

Download region SVG

Location: 214,203 - 237,193 nt. (total: 22,991 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Lanthipeptides

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Hydrolases: protease

A1T31_RS01120: alkaline serine protease, subtilase family

smcogs: SMCOG1075: alkaline serine protease, subtilase family

Lyases: cyclase

A1T31_RS01140: lanthionine synthetase C family protein

smcogs: SMCOG1070: lanthionine synthetase C family protein

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000500.5	0.60	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.5	0.51	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001555.4	0.51	ribosomal	colicin V	Escherichia coli chi7122
BGC0000554.4	0.50	ribosomal	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000590.5	0.50	ribosomal	microcin N	Escherichia coli
BGC0002698.2	0.50	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566
BGC0000622.5	0.49	ribosomal	megacin	Bacillus megaterium
BGC0000623.3	0.49	ribosomal	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0000502.5	0.49	ribosomal	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0001407.5	0.49	ribosomal	bicereucin	Bacillus cereus SJ1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000500.5	0.60	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.5	0.51	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001555.4	0.51	ribosomal	colicin V	Escherichia coli chi7122
BGC0000554.4	0.50	ribosomal	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000590.5	0.50	ribosomal	microcin N	Escherichia coli
BGC0002698.2	0.50	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566
BGC0000622.5	0.49	ribosomal	megacin	Bacillus megaterium
BGC0000623.3	0.49	ribosomal	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0000502.5	0.49	ribosomal	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0001407.5	0.49	ribosomal	bicereucin	Bacillus cereus SJ1

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptide(s) for A1T31_RS01140

A1T31_RS01145

Leader:

MKNDFVIGKSLKELSLEEMQLVYGG

Core:

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

Core with dehydrations:

DhbDGADPRDhaDhbIICysDhaADhbLDhaFIADhaYLGDhaAQDhbRCysGKDNKKK

antiSMASH-DB 4.0 matches for A1T31_RS01145

100.0%

NC_003028.3and 45 others:

NC_003098.1 Lanthipeptides: SPR_RS08865_lanthipeptideNC_011900.1 Lanthipeptides: SPN23F_RS10050_lanthipeptideNC_012466.1 Lanthipeptides: SPJ_RS09635_lanthipeptideNZ_CFDV01000030.1 Lanthipeptides: AQB43_RS08320_lanthipeptideNZ_CFVJ01000005.1 Lanthipeptides: AP598_RS03265_lanthipeptideNZ_CGGJ01000006.1 Lanthipeptides: AP607_RS03205_lanthipeptideNZ_CHVQ01000007.1 Lanthipeptides: AQF85_RS04285_lanthipeptideNZ_CJZM01000008.1 Lanthipeptides: AEE29_RS04155_lanthipeptideNZ_CLHL01000007.1 Lanthipeptides: AE723_RS05750_lanthipeptideNZ_CMIW01000004.1 Lanthipeptides: AD046_RS04075_lanthipeptideNZ_CMKL01000017.1 Lanthipeptides: AD734_RS09110_lanthipeptideNZ_CP035244.1 Lanthipeptides: EQH36_RS09105_lanthipeptideNZ_CP035253.1 Lanthipeptides: EQH27_RS09740_lanthipeptideNZ_CP082820.1 Lanthipeptides: K8B76_RS08865_lanthipeptideNZ_CPPE01000023.1 Lanthipeptides: AD654_RS06875_lanthipeptideNZ_CPRX01000013.1 Lanthipeptides: AEE77_RS05820_lanthipeptideNZ_CPTT01000011.1 Lanthipeptides: AEH42_RS06000_lanthipeptideNZ_CRAW01000006.1 Lanthipeptides: AK725_RS04395_lanthipeptideNZ_CRXO01000010.1 Lanthipeptides: AKU38_RS05260_lanthipeptideNZ_FCRW01000008.1 Lanthipeptides: A1N73_RS07425_lanthipeptideNZ_FDDE01000015.1 Lanthipeptides: A1A23_RS09705_lanthipeptideNZ_FDFR01000008.1 Lanthipeptides: A1O50_RS09320_lanthipeptideNZ_FDGF01000009.1 Lanthipeptides: A0899_RS06595_lanthipeptideNZ_FDQP01000009.1 Lanthipeptides: A1S42_RS08050_lanthipeptideNZ_FECM01000008.1 Lanthipeptides: A1930_RS06475_lanthipeptideNZ_FEEQ01000001.1 Lanthipeptides: A1T31_RS01145_lanthipeptideNZ_FEOS01000003.1 Lanthipeptides: A1178_RS03085_lanthipeptideNZ_FFTU01000009.1 Lanthipeptides: A1K37_RS06335_lanthipeptideNZ_FHJP02000011.1 Lanthipeptides: A1O79_RS07375_lanthipeptideNZ_FHRS02000028.1 Lanthipeptides: A1898_RS09820_lanthipeptideNZ_FIXQ01000010.1 Lanthipeptides: AZ721_RS04790_lanthipeptideNZ_FZDX01000018.1 Lanthipeptides: CFW91_RS09480_lanthipeptideNZ_FZEI01000008.1 Lanthipeptides: CFW58_RS06410_lanthipeptideNZ_JACVHZ010000010.1 Lanthipeptides: ICJ99_RS03880_lanthipeptideNZ_JAGFAE010000038.1 Lanthipeptides: J5E60_RS09005_lanthipeptideNZ_JALDUX010000010.1 Lanthipeptides: M1F92_RS09535_lanthipeptideNZ_JAMYJM010000002.1 Lanthipeptides: NKE69_RS04885_lanthipeptideNZ_LR216014.1 Lanthipeptides: E0F05_RS09385_lanthipeptideNZ_LR216016.1 Lanthipeptides: E0F10_RS10160_lanthipeptideNZ_LR216019.1 Lanthipeptides: E0E94_RS09635_lanthipeptideNZ_LR216027.1 Lanthipeptides: E0E81_RS09205_lanthipeptideNZ_LR216049.1 Lanthipeptides: E0E96_RS09540_lanthipeptideNZ_LR216064.1 Lanthipeptides: E0F31_RS09525_lanthipeptideNZ_LR536843.1 Lanthipeptides: E0F34_RS09600_lanthipeptideNZ_NANQ01000003.1 Lanthipeptides: B5K28_RS01935_lanthipeptide

Lanthipeptides: SP_RS09795_lanthipeptide

1

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

1

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

97.3%

NZ_MRXY01000010.1:

Lanthipeptides: BTU63_RS06305_lanthipeptide

1

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

TDGADPRS+IICSATLSFIASYLGSAQTRCGKDNKKK

1

TDGADPRSSIICSATLSFIASYLGSAQTRCGKDNKKK

37

97.3%

NZ_NAOJ01000022.1:

Lanthipeptides: B5K31_RS08015_lanthipeptide

1

TDGADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

TDGADPRST ICSATLSFIASYLGSAQTRCGKDNKKK

1

TDGADPRSTTICSATLSFIASYLGSAQTRCGKDNKKK

37

with 20 more sequence matches

Only the first 10 are displayed here.

70.3%

NZ_CP026035.1:

Lanthipeptides: C2H96_RS00310_lanthipeptide

4

ADPRSTIICSATLSFIASYLGSAQTRCGKDNKK

36

AD RST ICSA +SFIA+YLGSA T CGKDNKK

5

ADVRSTPICSAGISFIATYLGSAATNCGKDNKK

37

59.5%

NZ_CP094446.1:

Lanthipeptides: L3476_RS23820_lanthipeptide

2

DGADP--RSTIICSATLSFIASYLGSAQTRCGKDNKK

36

DG D RST+IC SFI SYL SA +CGK NKK

1

DGMDVEVRSTLICGVGASFIGSYLASAAFKCGKKNKK

37

56.8%

NZ_FNYB01000021.1:

Lanthipeptides: BMZ34_RS24360_lanthipeptide

3

GADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

G DPR+T SF+ASY+ SAQ RCGKDNK K

2

GVDPRTTP-SPLLASFVASYIASAQYRCGKDNKGK

35

56.8%

NZ_JACSNF010000005.1and 1 other:

NZ_LMPR01000013.1 Lanthipeptides: ASF99_RS16385_lanthipeptide

Lanthipeptides: KNQ12_RS14670_lanthipeptide

4

ADPRSTIICSATLSFIASYLGSAQTRCGKDNKK

36

D RS+++CSA LSF+ SYL SA +CGKDNKK

4

VDVRSSLVCSALLSFVGSYLASAGLKCGKDNKK

36

56.8%

NZ_KB976303.1:

Lanthipeptides: IGY_RS26050_lanthipeptide

3

GADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

G DPR+T SF+ASY+ SAQ RCGKDNK K

2

GVDPRTTP-SPLLASFVASYIASAQFRCGKDNKGK

35

55.3%

NZ_LWAG01000079.1:

Lanthipeptides: A4R27_RS25235_lanthipeptide

4

ADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

A+ RST+IC A +S I SYL SA +CGKDNK K

5

AEARSTLICGAGISLIGSYLASAAFKCGKDNKGK

38

54.1%

NZ_FNYB01000021.1:

Lanthipeptides: BMZ34_RS24355_lanthipeptide

3

GADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

G DPR+T SF+ASY+ SA+ RCGKDNK K

2

GVDPRTTP-SPLLASFVASYIASAEFRCGKDNKGK

35

51.4%

NZ_LN884299.1:

Lanthipeptides: BN2762_RS08665_lanthipeptide

4

ADPRSTIICSATLSFIASYLGSAQTRCGKDNK

35

A+ RST++C +SF+ASYL SA +CGKDNK

5

AEVRSTLLCGMGISFVASYLASAAFKCGKDNK

36

51.4%

NZ_NVMQ01000017.1:

Lanthipeptides: CON32_RS17790_lanthipeptide

3

GADPRSTIICSATLSFIASYLGSAQTRCGKDNKKK

37

G DPR+T SF+ASY+ SA+ +CGKDNK K

2

GVDPRTTP-SPLLASFVASYIASAEFKCGKDNKGK

35

48.6%

NZ_KN125582.1:

Lanthipeptides: DJ91_RS27545_lanthipeptide

3

GADPRSTIICSATLSFIASYLGSAQTRCGKDNK

35

G PR+T + SF+ASY+ SA+ RCGKDNK

2

GVTPRTTPATTLLASFVASYIASAEFRCGKDNK

34

A1T31_RS01150

Leader:

MTNFNSNEKFCGKSLKSLSADEMSLIYGA

Core:

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

Core with dehydrations:

DhaDGAEPRWDhbPDhbPIILKDhaAAADhaDhaKVCysIDhaAAVDhaGIGGLVDhaYNNDCysLG

antiSMASH-DB 4.0 matches for A1T31_RS01150

100.0%

NC_003028.3and 39 others:

NC_003098.1 Lanthipeptides: SPR_RS08860_lanthipeptideNC_011900.1 Lanthipeptides: SPN23F_RS10045_lanthipeptideNC_012466.1 Lanthipeptides: SPJ_RS09630_lanthipeptideNZ_CFDV01000030.1 Lanthipeptides: AQB43_RS08315_lanthipeptideNZ_CFVJ01000005.1 Lanthipeptides: AP598_RS03270_lanthipeptideNZ_CGGJ01000006.1 Lanthipeptides: AP607_RS03210_lanthipeptideNZ_CHVQ01000007.1 Lanthipeptides: AQF85_RS04280_lanthipeptideNZ_CJZM01000008.1 Lanthipeptides: AEE29_RS04150_lanthipeptideNZ_CLHL01000007.1 Lanthipeptides: AE723_RS05755_lanthipeptideNZ_CMIW01000004.1 Lanthipeptides: AD046_RS04070_lanthipeptideNZ_CP035253.1 Lanthipeptides: EQH27_RS09735_lanthipeptideNZ_CP082820.1 Lanthipeptides: K8B76_RS08860_lanthipeptideNZ_CPRX01000013.1 Lanthipeptides: AEE77_RS05815_lanthipeptideNZ_CPTT01000011.1 Lanthipeptides: AEH42_RS06005_lanthipeptideNZ_CRAW01000006.1 Lanthipeptides: AK725_RS04390_lanthipeptideNZ_CRXO01000010.1 Lanthipeptides: AKU38_RS05255_lanthipeptideNZ_FCRW01000008.1 Lanthipeptides: A1N73_RS07430_lanthipeptideNZ_FDDE01000015.1 Lanthipeptides: A1A23_RS09710_lanthipeptideNZ_FDFR01000008.1 Lanthipeptides: A1O50_RS09315_lanthipeptideNZ_FDGF01000009.1 Lanthipeptides: A0899_RS06590_lanthipeptideNZ_FDQP01000009.1 Lanthipeptides: A1S42_RS08045_lanthipeptideNZ_FECM01000008.1 Lanthipeptides: A1930_RS06470_lanthipeptideNZ_FEEQ01000001.1 Lanthipeptides: A1T31_RS01150_lanthipeptideNZ_FEOS01000003.1 Lanthipeptides: A1178_RS03090_lanthipeptideNZ_FFTU01000009.1 Lanthipeptides: A1K37_RS06340_lanthipeptideNZ_FHRS02000028.1 Lanthipeptides: A1898_RS09825_lanthipeptideNZ_FIXQ01000010.1 Lanthipeptides: AZ721_RS04795_lanthipeptideNZ_FZDX01000018.1 Lanthipeptides: CFW91_RS09485_lanthipeptideNZ_FZEI01000008.1 Lanthipeptides: CFW58_RS06405_lanthipeptideNZ_JACVHZ010000010.1 Lanthipeptides: ICJ99_RS03885_lanthipeptideNZ_JAGFAE010000038.1 Lanthipeptides: J5E60_RS09010_lanthipeptideNZ_LR216014.1 Lanthipeptides: E0F05_RS09380_lanthipeptideNZ_LR216019.1 Lanthipeptides: E0E94_RS09630_lanthipeptideNZ_LR216027.1 Lanthipeptides: E0E81_RS09200_lanthipeptideNZ_LR216049.1 Lanthipeptides: E0E96_RS09535_lanthipeptideNZ_LR216064.1 Lanthipeptides: E0F31_RS09520_lanthipeptideNZ_LR536843.1 Lanthipeptides: E0F34_RS09595_lanthipeptideNZ_NANQ01000003.1 Lanthipeptides: B5K28_RS01930_lanthipeptideNZ_NAOJ01000022.1 Lanthipeptides: B5K31_RS08010_lanthipeptide

Lanthipeptides: SP_RS09790_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

97.8%

NZ_CP035244.1and 3 others:

NZ_CPPE01000023.1 Lanthipeptides: AD654_RS06870_lanthipeptideNZ_FHJP02000011.1 Lanthipeptides: A1O79_RS07380_lanthipeptideNZ_LR216016.1 Lanthipeptides: E0F10_RS10155_lanthipeptide

Lanthipeptides: EQH36_RS09100_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

SDGAEPRWTPTPIILKSAAASSK+CISAAVSGIGGLVSYNNDCLG

1

SDGAEPRWTPTPIILKSAAASSKICISAAVSGIGGLVSYNNDCLG

45

95.6%

NZ_JALDUX010000010.1:

Lanthipeptides: M1F92_RS09530_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

SDGAEPRWTPTP+ILKSAAASSKVCISA VSGIGGLVSYNNDCLG

1

SDGAEPRWTPTPLILKSAAASSKVCISALVSGIGGLVSYNNDCLG

45

with 20 more sequence matches

Only the first 10 are displayed here.

91.1%

NZ_JAMYJM010000002.1:

Lanthipeptides: NKE69_RS04880_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

SDGAEPRWTPTP ILKSA ASSKVCISA VSGIGG+VSYNNDCLG

1

SDGAEPRWTPTPFILKSATASSKVCISAVVSGIGGIVSYNNDCLG

45

84.4%

NZ_MRXY01000010.1:

Lanthipeptides: BTU63_RS06300_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

SDGAEP WTPTP ILKSAA SSKVCISA +SGIGG+ SYNNDCLG

1

SDGAEPLWTPTPTILKSAARSSKVCISAIISGIGGIFSYNNDCLG

45

77.8%

NZ_CMKL01000017.1:

Lanthipeptides: AD734_RS09115_lanthipeptide

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGG

35

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGG

1

SDGAEPRWTPTPIILKSAAASSKVCISAAVSGIGG

35

54.3%

NZ_CP041405.1:

Lanthipeptides: FLT43_RS14400_lanthipeptide

5

EPRWTPT--PIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

EPR TPT P I + SSKVC+S S IGG+ S+NNDCLG

4

EPRATPTIVPAISAAVRTSSKVCLSLVASAIGGIASHNNDCLG

46

54.3%

NZ_LN884299.1:

Lanthipeptides: BN2762_RS08660_lanthipeptide

5

EPRWTPTPI--ILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

+PR TPT + I++S A SSKVCISA S I G+VS N +CLG

4

DPRATPTIVASIIRSVAQSSKVCISAVGSAISGIVSNNKNCLG

46

53.3%

NZ_JACSPZ010000014.1:

Lanthipeptides: H9635_RS18390_lanthipeptide

5

EPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

EP TP IL +A SSK C+ A+S I GLVSYN DCLG

5

EPHTTP---ILSAATKSSKKCL-GAISAISGLVSYNKDCLG

41

51.1%

NZ_LWAG01000079.1:

Lanthipeptides: A4R27_RS25230_lanthipeptide

5

EPRWTPTPIILKSAAASS-KVCISAAVSGIGGLVSYNNDCLG

45

+PRWTP ++AA S K+CISA S IGG+VSYN +C G

4

DPRWTPIASAAINSAARSSKICISAVGSAIGGIVSYNKNCAG

45

48.9%

NZ_CP094446.1:

Lanthipeptides: L3476_RS23825_lanthipeptide

5

EPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

EPR TP I+ + SSK CISA S I G++S+N DCLG

4

EPRGTPATIV-SAVTRSSKPCISAIGSAISGIISHNKDCLG

43

48.9%

NZ_KB976303.1and 1 other:

NZ_KB976303.1 Lanthipeptides: IGY_RS26035_lanthipeptide

Lanthipeptides: IGY_RS26045_lanthipeptide

3

GAEPRWTPTPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

G + R PT I++ + ASSK C+S VS I GL+SYN DC+G

2

GVDTRTHPTVIVV--SRASSKACMSG-VSAISGLLSYNKDCIG

41

46.7%

NZ_CP026035.1:

Lanthipeptides: C2H96_RS00305_lanthipeptide

4

AEPRWTP-TPIILKSAAASSKVCISAAVSGIGGLVSYNNDCLG

45

A+PRWTP +L + S+++CIS S I G+VS+N DCLG

3

ADPRWTPAVSAVLSAVGRSTRLCISGIGSAISGIVSHNKDCLG

45

MIBiG 4.0 matches for A1T31_RS01150

8.9%

BGC0000582.4 (ADR72962.1):

Linaridin: cypemycin

11

TPIILKSAAASSKVCI

26

TP + + S +C+

5

TPTVAQFVIQGSTICL

20

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Transcription Factor Binding Sites

Binding sites found:

ColR

Description: Phenol-responsive regulator
Species: Pseudomonas putida KT2440
Score: 24.81 out of 30.25

Confidence: medium

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 23.52 out of 26.06

Confidence: medium

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 23.70 out of 26.06

Confidence: medium

Additional weak hits (3):

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 22.23 out of 33.73

Confidence: weak

BldD

Description: Development and antibiotic global regulator
Species: Streptomyces coelicolor
Score: 19.16 out of 23.43

Confidence: weak

CelR

Description: Cellobiose uptake repressor
Species: Streptomyces coelicolor
Score: 20.04 out of 30.11

Confidence: weak

Lanthipeptides

TFBS Finder

Core peptide predictions

A1T31_RS01145 - Class II

Cleavage pHMM score: -1.30

RODEO score: 0

Monoisotopic mass: 3741.0 Da

Molecular weight: 3743.2 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 3761.2 Da N = 1; 3779.2 Da N = 2; 3797.3 Da N = 3; 3815.3 Da N = 4; 3833.3 Da N = 5; 3851.3 Da N = 6; 3869.3 Da N = 7

A1T31_RS01150 - Class II

Cleavage pHMM score: -0.40

RODEO score: 0

Monoisotopic mass: 4313.2 Da

Molecular weight: 4315.8 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 4333.9 Da N = 1; 4351.9 Da N = 2; 4369.9 Da N = 3; 4387.9 Da N = 4; 4405.9 Da N = 5; 4424.0 Da N = 6; 4442.0 Da N = 7

TFBS definitions

Regulator	Description
ColR	Phenol-responsive regulator
MogR	Repressor of flagellar motility genes

NZ_FEEQ01000004.1 - Region 1 - lanthipeptide-class-i

Download region GenBank file

Download region SVG

Location: 96,469 - 120,645 nt. (total: 24,177 nt) Show pHMM detection rules used

lanthipeptide-class-i: (((Lant_dehydr_N or Lant_dehydr_C) and cds(LANC_like and not Pkinase)) and not (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Lanthipeptides

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: dehydrogenase

A1T31_RS03880: nucleotide sugar dehydrogenase

smcogs: SMCOG1152: nucleotide sugar dehydrogenase

Transferases: glycosyltransferase

A1T31_RS13245: glycosyl transferase group 1

smcogs: SMCOG1045: glycosyl transferase group 1

Hydrolases: deacetylase

A1T31_RS03810: acetylornithine deacetylase

smcogs: SMCOG1247: acetylornithine deacetylase

Lyases: cyclase dehydratase

A1T31_RS03860: Lanthionine synthetase C family protein

smcogs: SMCOG1140: Lanthionine synthetase C family protein

A1T31_RS03865: Lantibiotic dehydratase domain protein

smcogs: SMCOG1155: Lantibiotic dehydratase domain protein

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000541.5	0.52	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0000531.3	0.50	ribosomal	mutacin I	Streptococcus mutans
BGC0000757.3	0.48	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000542.3	0.48	ribosomal	paenicidin B	Paenibacillus terrae
BGC0000538.3	0.48	ribosomal	nisin Z	Lactococcus lactis
BGC0000756.3	0.48	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000754.3	0.47	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000755.3	0.47	saccharide	capsular polysaccharide	Avibacterium paragallinarum 221
BGC0001289.5	0.47	ribosomal	penisin	Paenibacillus ehimensis
BGC0000506.4	0.46	ribosomal	entianin	Bacillus subtilis subsp. spizizenii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000541.5	0.52	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0000531.3	0.50	ribosomal	mutacin I	Streptococcus mutans
BGC0000757.3	0.48	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000542.3	0.48	ribosomal	paenicidin B	Paenibacillus terrae
BGC0000538.3	0.48	ribosomal	nisin Z	Lactococcus lactis
BGC0000756.3	0.48	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000754.3	0.47	saccharide	capsular polysaccharide	Avibacterium paragallinarum
BGC0000755.3	0.47	saccharide	capsular polysaccharide	Avibacterium paragallinarum 221
BGC0001289.5	0.47	ribosomal	penisin	Paenibacillus ehimensis
BGC0000506.4	0.46	ribosomal	entianin	Bacillus subtilis subsp. spizizenii

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Transcription Factor Binding Sites

Binding sites found:

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 23.61 out of 27.78

Confidence: medium

AbrC3

Description: Antibiotic production activator
Species: Streptomyces coelicolor
Score: 15.28 out of 18.16

Confidence: strong

Additional weak hits (4):

DosR

Description: Hypoxia stress response regulator
Species: Mycobacterium tuberculosis H37Rv
Score: 19.25 out of 29.51

Confidence: weak

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 22.53 out of 33.73

Confidence: weak

OsdR

Description: Development and stress management regulator
Species: Streptomyces coelicolor
Score: 16.99 out of 30.12

Confidence: weak

CsoR

Description: Copper-responsive repressor
Species: Streptomyces lividans
Score: 20.19 out of 32.38

Confidence: weak

Lanthipeptides

RREFinder

TFBS Finder

Core peptide predictions

No core peptides found.

RRE predictions

: RRE type: Lanthipeptide_LanB_RRE; Location: 154 - 221; Score: 29.1

TFBS definitions

Regulator	Description
AbrC3	Antibiotic production activator
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria

NZ_FEEQ01000007.1 - Region 1 - terpene-precursor

Download region GenBank file

Download region SVG

Location: 1 - 18,024 nt. (total: 18,024 nt) Show pHMM detection rules used

Region on contig edge.

terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Hydrolases: back translocase

A1T31_RS05585: GTP-binding protein LepA

smcogs: SMCOG1190: GTP-binding protein LepA

Ligases: synthetase

A1T31_RS05610: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002397.2	0.47	terpene	astallatene	Arabidopsis thaliana
BGC0002400.2	0.44	terpene	boleracene	Brassica oleracea var. oleracea
BGC0002398.2	0.38	terpene	(-)-ent-quiannulatene	Arabidopsis thaliana
BGC0001605.3	0.32	terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000648.3	0.31	terpene	carotenoid	Myxococcus xanthus
BGC0001456.3	0.30	terpene	isorenieratene	Streptomyces argillaceus
BGC0001756.3	0.28	terpene	retigeranin, arathanatriene	Arabidopsis thaliana
BGC0001594.3	0.27	other (other)	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001595.3	0.26	other (other)	fischerindole	Fischerella sp. SAG 46.79
BGC0000668.5	0.26	other (other), terpene	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002397.2	0.47	terpene	astallatene	Arabidopsis thaliana
BGC0002400.2	0.44	terpene	boleracene	Brassica oleracea var. oleracea
BGC0002398.2	0.38	terpene	(-)-ent-quiannulatene	Arabidopsis thaliana
BGC0001605.3	0.32	terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000648.3	0.31	terpene	carotenoid	Myxococcus xanthus
BGC0001456.3	0.30	terpene	isorenieratene	Streptomyces argillaceus
BGC0001756.3	0.28	terpene	retigeranin, arathanatriene	Arabidopsis thaliana
BGC0001594.3	0.27	other (other)	fischerindole L	Fischerella muscicola UTEX 1829
BGC0001595.3	0.26	other (other)	fischerindole	Fischerella sp. SAG 46.79
BGC0000668.5	0.26	other (other), terpene	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Subclass	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor		FPP	C15	acyclic	PP

Genes with terpene domains:

A1T31_RS05610: PT_FPPS_like

Domain 1 (27 - 272): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: Farnesyl diphosphate synthase, bacterial

Reactions:: IPP, DMAPP → FPP

Transcription Factor Binding Sites

Binding sites found:

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 22.39 out of 27.78

Confidence: medium

IolR

Description: Regulator of the inositol catabolism
Species: Caulobacter crescentus CB15
Score: 19.52 out of 23.79

Confidence: medium

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria
IolR	Regulator of the inositol catabolism

NZ_FEEQ01000014.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 20,084 - 33,182 nt. (total: 13,099 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Transferases: aminotransferase

A1T31_RS09295: aminotransferase

smcogs: SMCOG1019: aminotransferase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002579.2	0.54	ribosomal	carnobacteriocin XY	Carnobacterium maltaromaticum
BGC0002577.2	0.51	ribosomal	lactococcin G	Lactococcus lactis
BGC0000617.5	0.50	ribosomal	coagulin	Bacillus coagulans
BGC0000624.3	0.50	ribosomal	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000619.3	0.47	ribosomal	gassericin T	Lactobacillus gasseri
BGC0001602.3	0.47	ribosomal	gassericin-T	Lactobacillus gasseri
BGC0001388.3	0.47	ribosomal	gassericin E	Lactobacillus gasseri
BGC0001229.4	0.43	ribosomal	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002005.2	0.40	ribosomal	RaxX	Xanthomonas oryzae pv. oryzae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002579.2	0.54	ribosomal	carnobacteriocin XY	Carnobacterium maltaromaticum
BGC0002577.2	0.51	ribosomal	lactococcin G	Lactococcus lactis
BGC0000617.5	0.50	ribosomal	coagulin	Bacillus coagulans
BGC0000624.3	0.50	ribosomal	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000619.3	0.47	ribosomal	gassericin T	Lactobacillus gasseri
BGC0001602.3	0.47	ribosomal	gassericin-T	Lactobacillus gasseri
BGC0001388.3	0.47	ribosomal	gassericin E	Lactobacillus gasseri
BGC0001229.4	0.43	ribosomal	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002005.2	0.40	ribosomal	RaxX	Xanthomonas oryzae pv. oryzae

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 22.31 out of 26.06

Confidence: medium

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 22.09 out of 26.06

Confidence: medium

Additional weak hits (5):

RutR

Description: Regulator of the pyrimidine and purine metabolism
Species: Escherichia coli str. K-12 substr. MG1655
Score: 20.17 out of 26.85

Confidence: weak

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 21.29 out of 26.06

Confidence: weak

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 21.48 out of 29.25

Confidence: weak

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 21.98 out of 29.25

Confidence: weak

HypR

Description: L-hydroxyproline utilization repressor
Species: Streptomyces coelicolor
Score: 18.94 out of 22.40

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
MogR	Repressor of flagellar motility genes

NZ_FEEQ01000018.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 17,014 - 27,880 nt. (total: 10,867 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

No tailoring functions detected.

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000619.3	0.50	ribosomal	gassericin T	Lactobacillus gasseri
BGC0001602.3	0.50	ribosomal	gassericin-T	Lactobacillus gasseri
BGC0001388.3	0.50	ribosomal	gassericin E	Lactobacillus gasseri
BGC0000624.3	0.47	ribosomal	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000617.5	0.46	ribosomal	coagulin	Bacillus coagulans
BGC0002577.2	0.45	ribosomal	lactococcin G	Lactococcus lactis
BGC0002579.2	0.45	ribosomal	carnobacteriocin XY	Carnobacterium maltaromaticum
BGC0002330.2	0.36	ribosomal	landornamide A	Kamptonema sp. PCC 6506

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000619.3	0.50	ribosomal	gassericin T	Lactobacillus gasseri
BGC0001602.3	0.50	ribosomal	gassericin-T	Lactobacillus gasseri
BGC0001388.3	0.50	ribosomal	gassericin E	Lactobacillus gasseri
BGC0000624.3	0.47	ribosomal	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000617.5	0.46	ribosomal	coagulin	Bacillus coagulans
BGC0002577.2	0.45	ribosomal	lactococcin G	Lactococcus lactis
BGC0002579.2	0.45	ribosomal	carnobacteriocin XY	Carnobacterium maltaromaticum
BGC0002330.2	0.36	ribosomal	landornamide A	Kamptonema sp. PCC 6506

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 26.06 out of 26.06

Confidence: strong

AfsQ1

Description: Two-component system AfsQ1-Q2, activator of antibiotic production
Species: Streptomyces coelicolor
Score: 18.42 out of 19.52

Confidence: strong

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 20.08 out of 24.78

Confidence: medium

Additional weak hits (1):

VqsM

Description: Regulator of quorum-sensing signalling systems
Species: Pseudomonas aeruginosa PAO1
Score: 17.11 out of 20.47

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
AfsQ1	Two-component system AfsQ1-Q2, activator of antibiotic production
LexA variant 2	Repressor of DNA damage response
MogR	Repressor of flagellar motility genes

NZ_FEEQ01000029.1 - Region 1 - RiPP-like

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Location: 1 - 5,337 nt. (total: 5,337 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

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Gene overview

Tailoring

MIBiG comparison

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SubClusterBlast

TFBS Finder

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

No tailoring functions detected.

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002306.2	0.42	ribosomal	freyrasin	Paenibacillus polymyxa ATCC 842
BGC0000504.5	0.41	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001638.4	0.40	ribosomal	klebsazolicin	Klebsiella pneumoniae subsp. ozaenae
BGC0000500.5	0.40	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001639.3	0.40	ribosomal	klebsidin	Klebsiella pneumoniae
BGC0002111.3	0.40	ribosomal	andalusicin A, andalusicin B	Bacillus thuringiensis serovar andalousiensis NRRL B-23139
BGC0001576.3	0.40	ribosomal	divamide A	Prochloron didemni
BGC0002049.3	0.40	ribosomal	microviridin N9, microviridin N8, microviridin N7, microviridin N6, microviridin N5, microviridin N4, microviridin N3	Nostoc punctiforme PCC 73102
BGC0001887.3	0.39	ribosomal	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000558.5	0.42	ribosomal	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0002306.2	0.42	ribosomal	freyrasin	Paenibacillus polymyxa ATCC 842
BGC0000504.5	0.41	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001638.4	0.40	ribosomal	klebsazolicin	Klebsiella pneumoniae subsp. ozaenae
BGC0000500.5	0.40	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001639.3	0.40	ribosomal	klebsidin	Klebsiella pneumoniae
BGC0002111.3	0.40	ribosomal	andalusicin A, andalusicin B	Bacillus thuringiensis serovar andalousiensis NRRL B-23139
BGC0001576.3	0.40	ribosomal	divamide A	Prochloron didemni
BGC0002049.3	0.40	ribosomal	microviridin N9, microviridin N8, microviridin N7, microviridin N6, microviridin N5, microviridin N4, microviridin N3	Nostoc punctiforme PCC 73102
BGC0001887.3	0.39	ribosomal	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 25.42 out of 26.06

Confidence: strong

Additional weak hits (1):

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 22.38 out of 29.25

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
MogR	Repressor of flagellar motility genes