GCF_018333215.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NZ_BORO01000007.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 7.1	lanthipeptide-class-ii,terpene-precursor	62,671	98,627	High	mersacidin	ribosomal:RiPP:Lanthipeptide

NZ_BORO01000008.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 8.1	terpene-precursor	69,172	90,056

NZ_BORO01000009.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 9.1	terpene	60,358	81,179

NZ_BORO01000012.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 12.1	terpene-precursor	60,032	82,344

NZ_BORO01000022.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 22.1	T3PKS	28,626	61,244

NZ_BORO01000025.1 (Oceanobacillus sp. J11TS1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 25.1	RRE-containing	1	10,454

No secondary metabolite regions were found in these records:: NZ_BORO01000001.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000002.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000003.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000004.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000005.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000006.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000010.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000011.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000013.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000014.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000015.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000016.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000017.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000018.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000019.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000020.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000021.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000023.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000024.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000026.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000027.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000028.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000029.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000030.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000031.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000032.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000033.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000034.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000035.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000036.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000037.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000038.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000039.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000040.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000041.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000042.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000043.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000044.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000045.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000046.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000047.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000048.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000049.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000050.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000051.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000052.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000053.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000054.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000055.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000056.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000057.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000058.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000059.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000060.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000061.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000062.1 (Oceanobacillus sp. J11TS1); NZ_BORO01000063.1 (Oceanobacillus sp. J11TS1)

Compact view

NZ_BORO01000007.1 - Region 1 - lanthipeptide-class-ii,terpene-precursor

Download region GenBank file

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Location: 62,671 - 98,627 nt. (total: 35,957 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)
terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Lanthipeptides

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Lyases: cyclase

KI343_RS07730: lanthionine synthetase C family protein

smcogs: SMCOG1070: lanthionine synthetase C family protein

Ligases: synthetase

KI343_RS07800: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.5	0.79	ribosomal	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000528.5	0.37	ribosomal	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000516.4	0.36	ribosomal	geobacillin II	Geobacillus thermodenitrificans
BGC0000547.5	0.31	ribosomal	salivaricin 9	Streptococcus salivarius
BGC0000539.5	0.30	ribosomal	nukacin ISK-1	Staphylococcus warneri
BGC0001787.3	0.30	ribosomal	suicin 3908	Streptococcus suis
BGC0001210.5	0.30	ribosomal	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000626.3	0.28	ribosomal	thuricin	Bacillus thuringiensis
BGC0000545.5	0.28	ribosomal	ruminococcin A	[Ruminococcus] gnavus E1
BGC0002346.3	0.28	ribosomal	kyamicin	Saccharopolyspora sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000527.5	0.83	ribosomal	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000504.5	0.57	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000528.5	0.56	ribosomal	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000554.4	0.56	ribosomal	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000551.5	0.55	ribosomal	SapB	Streptomyces coelicolor A3(2)
BGC0000516.4	0.54	ribosomal	geobacillin II	Geobacillus thermodenitrificans
BGC0000539.5	0.53	ribosomal	nukacin ISK-1	Staphylococcus warneri
BGC0001787.3	0.53	ribosomal	suicin 3908	Streptococcus suis
BGC0001210.5	0.52	ribosomal	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000525.5	0.51	ribosomal	lichenicidin VK21 A1, lichenicidin VK21 A2	Bacillus licheniformis

Similar known clusters from MIBiG 4.0

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptide(s) for KI343_RS07730

KI343_RS20555

Leader:

MQMSNSNLQFYNYKRIHSTIGYM

Core:

SPIAYEKMYLCKIVS

Core with dehydrations:

DhaPIAYEKMYLCysKIVDha

antiSMASH-DB 4.0 matches for KI343_RS20555

100.0%

NZ_BORO01000007.1:

Lanthipeptides: allorf_067478_067588_lanthipeptide

SPIAYEKMYLCKIVS

15.4%

NZ_CP029750.1and 1 other:

NZ_CP077907.1 Lanthipeptides: allorf_14534_14638_lanthipeptide

Lanthipeptides: allorf_36246_36350_lanthipeptide

KMYLCKIV

KM+LC+++

KMFLCEVI

MIBiG 4.0 matches for KI343_RS20555

20.0%

BGC0000580.3 (EGD17355.1):

Lasso peptide: xanthomonin II or xanthomonin I

SPIAYEKM

P+A E+M

GPLAGEEM

KI343_RS07745

Leader:

MSKEAMINSWKDPLARENASTQNPAGNPFNELEEAQMDKVVGA

Core:

GDMEAACTWTLPGGGGVCTLTSECIC

Core with dehydrations:

GDMEAACysDhbWDhbLPGGGGVCysDhbLDhbDhaECysICys

antiSMASH-DB 4.0 matches for KI343_RS07745

100.0%

NZ_BORO01000007.1:

Lanthipeptides: KI343_RS07745_lanthipeptide

GDMEAACTWTLPGGGGVCTLTSECIC

96.2%

NC_017912.1and 14 others:

NZ_CP007242.1 Lanthipeptides: KHU1_RS17410_lanthipeptideNZ_CP031424.1 Lanthipeptides: DXX91_RS18935_lanthipeptideNZ_CP032855.1 Lanthipeptides: D9C11_RS10440_lanthipeptideNZ_CP043809.1 Lanthipeptides: ETZ92_RS14260_lanthipeptideNZ_CP049904.1 Lanthipeptides: V753_RS18470_lanthipeptideNZ_CP053764.1 Lanthipeptides: HPQ66_RS18325_lanthipeptideNZ_CP061938.1 Lanthipeptides: IEN91_RS19800_lanthipeptideNZ_CP063768.1 Lanthipeptides: IM712_RS05205_lanthipeptideNZ_CP087137.1 Lanthipeptides: LOK79_RS18580_lanthipeptideNZ_CP092383.1 Lanthipeptides: MID02_RS19390_lanthipeptideNZ_JAEACM010000001.1 Lanthipeptides: I5F15_RS04355_lanthipeptideNZ_JAJNPN010000015.1 Lanthipeptides: LQ568_RS13285_lanthipeptideNZ_SDKF01000002.1 Lanthipeptides: EUA41_RS09950_lanthipeptideNZ_VDUT01000007.1 Lanthipeptides: FS412_RS14545_lanthipeptide

Lanthipeptides: MUS_RS20065_lanthipeptide

GDMEAACTWTLPGGGGVCTLTSECIC

GDMEAACT+TLPGGGGVCTLTSECIC

GDMEAACTFTLPGGGGVCTLTSECIC

96.2%

NZ_JALASB010000016.1and 3 others:

NZ_JALASR010000012.1 Lanthipeptides: MOD87_RS16305_lanthipeptideNZ_JALAUW010000005.1 Lanthipeptides: MOE83_RS03160_lanthipeptideNZ_JALAXQ010000010.1 Lanthipeptides: MOF24_RS12150_lanthipeptide

Lanthipeptides: MOD42_RS18070_lanthipeptide

GDMEAACTWTLPGGGGVCTLTSECIC

GDMEAACTWTLPGGGGVCT+TSECIC

GDMEAACTWTLPGGGGVCTITSECIC

with 89 more sequence matches

Only the first 10 are displayed here.

96.2%

NZ_KZ454939.1:

Lanthipeptides: CEF20_RS01155_lanthipeptide

GDMEAACTWTLPGGGGVCTLTSECIC

GDMEAACTWTLPGGGGVCT+TSECIC

GDMEAACTWTLPGGGGVCTVTSECIC

39.3%

NZ_FOBE01000018.1:

Lanthipeptides: BMW61_RS13085_lanthipeptide

DMEAACTWTLPGGGGVCTLTSEC

+M AA L G CTLT EC

EMSAA----LGNRGSYCTLTKEC

38.5%

NZ_CP035495.1and 1 other:

NZ_CP035495.1 Lanthipeptides: ET495_RS17535_lanthipeptide

Lanthipeptides: ET495_RS17535_lanthipeptide

WTLPGG---GGVCTLTSEC

WT+PG G CTL+ EC

WTIPGTSTIGRFCTLSWEC

35.3%

NZ_SDLS01000001.1:

Lanthipeptides: EIZ45_RS45960_lanthipeptide

DMEAACTWTLPGGGGVCTLTSECIC

D+ A T LP G +CT T EC C

DLAEARTAALPSSGYICTFTFECNC

34.6%

NZ_CP034669.1:

Lanthipeptides: EJ065_RS32040_lanthipeptide

GGVCTLTSECIC

G VCTLT+EC C

GYVCTLTTECGC

34.6%

NZ_JALMDK010000017.1:

Lanthipeptides: allorf_059288_059443_lanthipeptide

GGGVCTLTSECIC

GG +CTLT EC C

GGYICTLTWECNC

34.5%

NZ_CP025227.1:

Lanthipeptides: allorf_0999194_0999376_lanthipeptide

WTLPGG---GGVCTLTSEC

WT+P G VCTL+ EC

WTVPTTSTIGLVCTLSWEC

34.5%

NZ_LR027842.1:

Lanthipeptides: E0E39_RS15855_lanthipeptide

WTLPGG---GGVCTLTSEC

WT+PG G VCT++ EC

WTVPGTRTIGAVCTVSWEC

34.4%

NC_002570.2and 3 others:

NC_002570.2 Lanthipeptides: AYT26_RS02480_lanthipeptideNZ_CP040441.1 Lanthipeptides: FED51_RS02600_lanthipeptideNZ_CP040441.1 Lanthipeptides: FED51_RS02600_lanthipeptide

Lanthipeptides: AYT26_RS02480_lanthipeptide

MEAACTW-----TLPGGGGVCTLTSECI

+ AC W L G CTLT EC+

VNGACAWYNISCRLGNKGAYCTLTVECM

34.4%

NC_018499.1and 20 others:

NC_018499.1 Lanthipeptides: BCK_RS27855_lanthipeptideNC_018499.1 Lanthipeptides: BCK_RS27850_lanthipeptideNC_018499.1 Lanthipeptides: BCK_RS27860_lanthipeptideNC_018499.1 Lanthipeptides: BCK_RS27855_lanthipeptideNC_018499.1 Lanthipeptides: BCK_RS27850_lanthipeptideNZ_CP036019.1 Lanthipeptides: EXW52_RS27215_lanthipeptideNZ_CP036019.1 Lanthipeptides: EXW52_RS27210_lanthipeptideNZ_CP036019.1 Lanthipeptides: EXW52_RS27215_lanthipeptideNZ_CP036019.1 Lanthipeptides: EXW52_RS27210_lanthipeptideNZ_JANIOB010000033.1 Lanthipeptides: NQ113_RS28005_lanthipeptideNZ_JAOPQW010000026.1 Lanthipeptides: OCD10_RS25275_lanthipeptideNZ_JAOPQW010000026.1 Lanthipeptides: OCD10_RS25270_lanthipeptideNZ_JH791925.1 Lanthipeptides: IE3_RS28545_lanthipeptideNZ_MLKL01000042.1 Lanthipeptides: BKK45_RS27570_lanthipeptideNZ_MLKL01000042.1 Lanthipeptides: BKK45_RS27565_lanthipeptideNZ_MLKL01000042.1 Lanthipeptides: BKK45_RS27560_lanthipeptideNZ_NUML01000015.1 Lanthipeptides: COD66_RS20150_lanthipeptideNZ_NUML01000015.1 Lanthipeptides: COD66_RS20145_lanthipeptideNZ_NUVR01000040.1 Lanthipeptides: COI88_RS26655_lanthipeptideNZ_NUVR01000040.1 Lanthipeptides: COI88_RS26650_lanthipeptide

Lanthipeptides: BCK_RS27860_lanthipeptide

EAACTWTLPGGGGVCTLTSECI

E +W L GG CTLT EC+

EGLSSW-LGNKGGYCTLTKECM

MIBiG 4.0 matches for KI343_RS07745

30.0%

BGC0002110.3 (QKV49893.1):

Lanthipeptide: birimositide

LPGGGGVCTLTSEC

L GG CTLT EC

LGNNGGWCTLTKEC

28.6%

BGC0000517.4 (BAB04173.1):

Lanthipeptide: haloduracin β or haloduracin α

LPGGGGVCTLTSECI

L G CTLT EC+

LGNKGAYCTLTVECM

12.8%

BGC0001229.4 (SBI_06990):

Lanthipeptide: SBI-06990 A1 or SBI-06989 A2

CTLTSEC

CTL+ EC

CTLSKEC

allorf_062970_063044

Leader:

MSLYRLKGIHFT

Core:

NLCFLKHYNLFS

Core with dehydrations:

NLCysFLKHYNLFDha

antiSMASH-DB 4.0 matches for allorf_062970_063044

100.0%

NZ_BORO01000007.1:

Lanthipeptides: allorf_062970_063044_lanthipeptide

NLCFLKHYNLFS

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed terpene predictions

Product predictions:

Class	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor	FPP	C15	acyclic	PP
diterpene precursor	GGPP	C20	acyclic	PP
sesterterpene precursor	GFPP	C25	acyclic	PP
triterpene precursor	HPP	C30	acyclic	PP

Genes with terpene domains:

KI343_RS07800: PT_FPPS_like

Domain 1 (65 - 297): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: unknown

Reactions:: IPP, DMAPP → FPP; IPP, DMAPP → GGPP; IPP, DMAPP → GFPP; IPP, DMAPP → HPP

Transcription Factor Binding Sites

Binding sites found:

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 22.93 out of 29.25

Confidence: medium

ArcA

Description: Repressor of carbon oxidation
Species: Escherichia coli str. K-12 substr. MG1655
Score: 21.55 out of 21.55

Confidence: strong

Additional weak hits (3):

ArgR

Description: Regulator of arginine biosynthesis genes
Species: Streptomyces coelicolor
Score: 17.86 out of 20.01

Confidence: weak

FuR variant 1

Description: Ferric Uptake Regulator
Species: Bacillus, Pseudomonas, Yersinia sp.
Score: 23.49 out of 29.38

Confidence: weak

CelR

Description: Cellobiose uptake repressor
Species: Streptomyces coelicolor
Score: 18.55 out of 30.11

Confidence: weak

Lanthipeptides

Terpene

TFBS Finder

Core peptide predictions

KI343_RS20555 - Class II

Cleavage pHMM score: -6.30

RODEO score: 0

Monoisotopic mass: 1661.9 Da

Molecular weight: 1663.1 Da

Number of bridges: 0

Additional modifications: AviCys

Alternative weights: (assuming N unmodified Ser/Thr residues); 1681.1 Da N = 1

KI343_RS07745 - Class II

Cleavage pHMM score: -1.00

RODEO score: 0

Monoisotopic mass: 2438.1 Da

Molecular weight: 2439.8 Da

Number of bridges: 3

Additional modifications: AviCys

Alternative weights: (assuming N unmodified Ser/Thr residues); 2457.9 Da N = 1

allorf_062970_063044 - Class II

Cleavage pHMM score: -5.80

RODEO score: 0

Monoisotopic mass: 1433.7 Da

Molecular weight: 1434.7 Da

Number of bridges: 0

Additional modifications: AviCys

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
GFPP	Geranylfarnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
HPP	Hexaprenyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description
ArcA	Repressor of carbon oxidation
SypG	Regulator of biofilm formation and host colonization

NZ_BORO01000008.1 - Region 1 - terpene-precursor

Download region GenBank file

Download region SVG

Location: 69,172 - 90,056 nt. (total: 20,885 nt) Show pHMM detection rules used

terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Transferases: carboxylase

KI343_RS08635: acetyl-CoA carboxylase biotin carboxylase

smcogs: SMCOG1090: acetyl-CoA carboxylase biotin carboxylase

Ligases: synthetase

KI343_RS08665: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002397.2	0.47	terpene	astallatene	Arabidopsis thaliana
BGC0002400.2	0.44	terpene	boleracene	Brassica oleracea var. oleracea
BGC0002398.2	0.38	terpene	(-)-ent-quiannulatene	Arabidopsis thaliana
BGC0000043.5	0.35	PKS	curacin A	Moorea producens 19L
BGC0002284.3	0.35	other (other)	corynecin III, corynecin I, corynecin II	Rhodococcus sp. H-CA8f
BGC0000234.5	0.32	PKS	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001605.3	0.32	terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000678.5	0.31	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000528.5	0.31	ribosomal	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000665.5	0.31	other (other), terpene	xiamycin, indosespene, sespenine, dixiamycin A, dixiamycin B, sulfadixiamycin A, sulfadixiamycin B, sulfadixiamycin C	Streptomyces sp. HKI0576

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002397.2	0.47	terpene	astallatene	Arabidopsis thaliana
BGC0002400.2	0.44	terpene	boleracene	Brassica oleracea var. oleracea
BGC0002398.2	0.38	terpene	(-)-ent-quiannulatene	Arabidopsis thaliana
BGC0000043.5	0.35	PKS	curacin A	Moorea producens 19L
BGC0002284.3	0.35	other (other)	corynecin III, corynecin I, corynecin II	Rhodococcus sp. H-CA8f
BGC0000234.5	0.32	PKS	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001605.3	0.32	terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000678.5	0.31	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000528.5	0.31	ribosomal	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000665.5	0.31	other (other), terpene	xiamycin, indosespene, sespenine, dixiamycin A, dixiamycin B, sulfadixiamycin A, sulfadixiamycin B, sulfadixiamycin C	Streptomyces sp. HKI0576

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Subclass	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor		FPP	C15	acyclic	PP

Genes with terpene domains:

KI343_RS08665: PT_FPPS_like

Domain 1 (33 - 294): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: Farnesyl diphosphate synthase, bacterial

Reactions:: DMAPP, IPP → FPP

Transcription Factor Binding Sites

Binding sites found:

ColR

Description: Phenol-responsive regulator
Species: Pseudomonas putida KT2440
Score: 23.60 out of 30.25

Confidence: medium

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 17.40 out of 19.26

Confidence: medium

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 21.85 out of 24.78

Confidence: medium

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 20.18 out of 24.78

Confidence: medium

Additional weak hits (2):

FuR variant 2

Description: Ferric Uptake Regulator
Species: Caulobacter crescentus CB15
Score: 23.05 out of 32.74

Confidence: weak

RpoN

Description: Regulator of nitrogen assimilation and virulence
Species: Salmonella & Vibrio sp.
Score: 15.87 out of 18.46

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description
CRP	Cyclic AMP receptor protein
ColR	Phenol-responsive regulator
LexA variant 2	Repressor of DNA damage response

NZ_BORO01000009.1 - Region 1 - terpene

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Location: 60,358 - 81,179 nt. (total: 20,822 nt) Show pHMM detection rules used

terpene: (PT_phytoene_like or phytoene_synt or Lycopene_cycl or Lycopene_cycl_fung or T1TS or T1TS_KS or T2TS or TS_UbiA or TS_Pyr4)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

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Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Transferases: acetyltransferase carbamoyltransferase phosphorylase

KI343_RS09325: thiamine-phosphate pyrophosphorylase

smcogs: SMCOG1280: thiamine-phosphate pyrophosphorylase

KI343_RS09380: ornithine carbamoyltransferase

smcogs: SMCOG1114: ornithine carbamoyltransferase

KI343_RS09390: GCN5-related N-acetyltransferase

smcogs: SMCOG1111: GCN5-related N-acetyltransferase

Ligases: synthase

KI343_RS09365: cysteine synthase

smcogs: SMCOG1081: cysteine synthase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.4	0.42	ribosomal	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001226.4	0.42	ribosomal	streptocollin	Streptomyces collinus Tu 365
BGC0000883.5	0.41	other (other)	arginomycin	Streptomyces arginensis
BGC0001579.4	0.40	ribosomal	duramycin	Streptomyces cinnamoneus
BGC0002674.2	0.40	ribosomal	enterocin F4-9	Enterococcus faecalis
BGC0000630.3	0.39	terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000635.3	0.39	terpene	carotenoid	Paracoccus sp. N81106
BGC0001660.3	0.38	ribosomal	mathermycin	Marinactinospora thermotolerans
BGC0000895.5	0.33	other (other)	citrulline	Lactobacillus plantarum subsp. plantarum
BGC0001872.3	0.32	PKS	fabclavine-polyamine	Xenorhabdus bovienii SS-2004

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.4	0.42	ribosomal	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001226.4	0.42	ribosomal	streptocollin	Streptomyces collinus Tu 365
BGC0000883.5	0.41	other (other)	arginomycin	Streptomyces arginensis
BGC0001579.4	0.40	ribosomal	duramycin	Streptomyces cinnamoneus
BGC0002674.2	0.40	ribosomal	enterocin F4-9	Enterococcus faecalis
BGC0000630.3	0.39	terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000635.3	0.39	terpene	carotenoid	Paracoccus sp. N81106
BGC0001660.3	0.38	ribosomal	mathermycin	Marinactinospora thermotolerans
BGC0000895.5	0.33	other (other)	citrulline	Lactobacillus plantarum subsp. plantarum
BGC0001872.3	0.32	PKS	fabclavine-polyamine	Xenorhabdus bovienii SS-2004

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Subclass	Product name	Chain length	Initial cyclisations	Functional groups
triterpene	C30 carotenoid	diapophytoene	C30	acyclic	none
triterpene		squalene	C30	acyclic	none
triterpene		PSPP	C30	acyclic	PP
tetraterpene	C40 carotenoid	phytoene	C40	acyclic	none
triterpene		hydroxysqualene	C30	acyclic	OH

Genes with terpene domains:

KI343_RS09345: PT_phytoene_like

Domain 1 (14 - 251): Prenyltransferase; Phytoene synthase like

Subtype: unknown

Reactions:: FPP → diapophytoene; FPP → squalene; FPP → PSPP; GGPP → phytoene; PSPP → hydroxysqualene

Transcription Factor Binding Sites

Binding sites found:

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 22.16 out of 27.78

Confidence: medium

AbrC3

Description: Antibiotic production activator
Species: Streptomyces coelicolor
Score: 15.78 out of 18.16

Confidence: strong

Additional weak hits (5):

FuR variant 1

Description: Ferric Uptake Regulator
Species: Bacillus, Pseudomonas, Yersinia sp.
Score: 22.51 out of 29.38

Confidence: weak

VqsM

Description: Regulator of quorum-sensing signalling systems
Species: Pseudomonas aeruginosa PAO1
Score: 17.11 out of 20.47

Confidence: weak

MatP

Description: Cell cycle regulator
Species: Escherichia coli str. K-12 substr. MG1655
Score: 22.33 out of 25.75

Confidence: weak

CelR

Description: Cellobiose uptake repressor
Species: Streptomyces coelicolor
Score: 20.04 out of 30.11

Confidence: weak

CelR

Description: Cellobiose uptake repressor
Species: Streptomyces coelicolor
Score: 20.86 out of 30.11

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
FPP	Farnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
PP	Diphosphate
PSPP	Presqualene diphosphate

TFBS definitions

Regulator	Description
AbrC3	Antibiotic production activator
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria

NZ_BORO01000012.1 - Region 1 - terpene-precursor

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Location: 60,032 - 82,344 nt. (total: 22,313 nt) Show pHMM detection rules used

terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Ligases: synthetase

KI343_RS11205: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000664.5	0.31	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001456.3	0.30	terpene	isorenieratene	Streptomyces argillaceus
BGC0000649.3	0.29	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000905.5	0.29	other (other)	heme D1	Heliobacillus mobilis
BGC0000906.3	0.29	other (other)	heme D1	Heliophilum fasciatum
BGC0001672.3	0.27	NRPS	monobactam	[Flexibacter] sp. ATCC 35103
BGC0001595.3	0.26	other (other)	fischerindole	Fischerella sp. SAG 46.79
BGC0000668.5	0.26	other (other), terpene	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0000188.5	0.25	other (other)	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000978.5	0.23	NRPS, PKS, other (other)	cylindrospermopsin	Cylindrospermopsis raciborskii AWT205

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000664.5	0.31	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001456.3	0.30	terpene	isorenieratene	Streptomyces argillaceus
BGC0000649.3	0.29	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000905.5	0.29	other (other)	heme D1	Heliobacillus mobilis
BGC0000906.3	0.29	other (other)	heme D1	Heliophilum fasciatum
BGC0001672.3	0.27	NRPS	monobactam	[Flexibacter] sp. ATCC 35103
BGC0001595.3	0.26	other (other)	fischerindole	Fischerella sp. SAG 46.79
BGC0000668.5	0.26	other (other), terpene	12-epi-hapalindole C isonitrile, 12-epi-hapalindole E, 12-epi-fischerindole U isonitrile, fischerindole L, 12-epi-fischerindole I isonitrile, welwitindolinone A isonitrile, welwitindolinone B isothiocyanate, welwitindolinone C isothiocyanate, N-methylwelwitindolinone C isothiocyanate, N-methylwelwitinsolinone C isonitrile, 3-epi-welwitindolinone B isothiocyanate, 3-(Z-2'-isocyanoethenyl)-indole	Hapalosiphon welwitschii UTEX B 1830
BGC0000188.5	0.25	other (other)	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000978.5	0.23	NRPS, PKS, other (other)	cylindrospermopsin	Cylindrospermopsis raciborskii AWT205

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor	FPP	C15	acyclic	PP
diterpene precursor	GGPP	C20	acyclic	PP
sesterterpene precursor	GFPP	C25	acyclic	PP
triterpene precursor	HPP	C30	acyclic	PP

Genes with terpene domains:

KI343_RS11205: PT_FPPS_like

Domain 1 (511 - 737): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: unknown

Reactions:: IPP, DMAPP → FPP; IPP, DMAPP → GGPP; IPP, DMAPP → GFPP; IPP, DMAPP → HPP

Transcription Factor Binding Sites

Binding sites found:

PerR

Description: Peroxide regulator
Species: Bacillus & Staphylococcus sp.
Score: 26.23 out of 28.14

Confidence: medium

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 21.94 out of 27.78

Confidence: medium

Additional weak hits (4):

NtrC

Description: Nitrogen regulatory protein C
Species: Pseudomonas putida KT2440
Score: 21.13 out of 29.72

Confidence: weak

DmdR1

Description: Iron(II)-dependent repressor
Species: Streptomyces coelicolor
Score: 23.40 out of 36.53

Confidence: weak

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 22.75 out of 33.73

Confidence: weak

ZuR variant 2

Description: Zinc-responsive repressor
Species: Pseudomonas protegens Pf-5
Score: 23.54 out of 33.14

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
GFPP	Geranylfarnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
HPP	Hexaprenyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria
PerR	Peroxide regulator

NZ_BORO01000022.1 - Region 1 - T3PKS

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Location: 28,626 - 61,244 nt. (total: 32,619 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

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KnownClusterBlast

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TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Ligases: synthase

KI343_RS15090: hydroxymethylglutaryl-CoA synthase

smcogs: SMCOG1043: hydroxymethylglutaryl-CoA synthase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000205.3	0.40	PKS	bryostatin	Candidatus Endobugula sertula
BGC0002561.3	0.35	other (other)	phenazine SA, phenazine SB, phenazine SC	Streptomyces sp.
BGC0000934.4	0.32	other (phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0002407.3	0.31	other (other), saccharide	angustmycin A, angustmycin C	Streptomyces angustmyceticus
BGC0000286.3	0.31	PKS	viguiepinol	Streptomyces sp. KO-3988
BGC0001080.5	0.30	other (phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0002525.3	0.30	PKS	fusarubin, 1233A, 1233B, NG-391, lucilactaene	Fusarium sp.
BGC0000889.5	0.29	other (other)	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0001592.5	0.28	other (other)	ferroverdin, bagremycin	Streptomyces lunaelactis
BGC0001076.5	0.27	other (nucleoside)	liposidomycin B, liposidomycin A, liposidomycin C, liposidomycin Z, liposidomycin H, liposidomycin G, liposidomycin L, liposidomycin M, liposidomycin K, liposidomycin N	Streptomyces sp. SN-1061M

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000205.3	0.40	PKS	bryostatin	Candidatus Endobugula sertula
BGC0002561.3	0.35	other (other)	phenazine SA, phenazine SB, phenazine SC	Streptomyces sp.
BGC0000934.4	0.32	other (phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0002407.3	0.31	other (other), saccharide	angustmycin A, angustmycin C	Streptomyces angustmyceticus
BGC0000286.3	0.31	PKS	viguiepinol	Streptomyces sp. KO-3988
BGC0001080.5	0.30	other (phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0002525.3	0.30	PKS	fusarubin, 1233A, 1233B, NG-391, lucilactaene	Fusarium sp.
BGC0000889.5	0.29	other (other)	bagremycin A, bagremycin B	Streptomyces sp. WK-5344
BGC0001592.5	0.28	other (other)	ferroverdin, bagremycin	Streptomyces lunaelactis
BGC0001076.5	0.27	other (nucleoside)	liposidomycin B, liposidomycin A, liposidomycin C, liposidomycin Z, liposidomycin H, liposidomycin G, liposidomycin L, liposidomycin M, liposidomycin K, liposidomycin N	Streptomyces sp. SN-1061M

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 19.26 out of 19.26

Confidence: strong

ToxT

Description: Regulator of MSHA biosynthesis
Species: Vibrio cholerae O395
Score: 18.57 out of 18.57

Confidence: strong

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 17.55 out of 19.26

Confidence: medium

LexA variant 3

Description: Repressor of DNA damage response
Species: Escherichia coli str. K-12 substr. MG1655
Score: 24.05 out of 32.93

Confidence: medium

Additional weak hits (3):

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 20.27 out of 25.88

Confidence: weak

DosR

Description: Hypoxia stress response regulator
Species: Mycobacterium tuberculosis H37Rv
Score: 21.76 out of 29.51

Confidence: weak

NrdR

Description: Represses ribonucleotide reductase encoding genes
Species: Streptomyces coelicolor
Score: 19.96 out of 27.18

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
CRP	Cyclic AMP receptor protein
LexA variant 3	Repressor of DNA damage response
ToxT	Regulator of MSHA biosynthesis

NZ_BORO01000025.1 - Region 1 - RRE-containing

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Location: 1 - 10,454 nt. (total: 10,454 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

No tailoring functions detected.

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002306.2	0.42	ribosomal	freyrasin	Paenibacillus polymyxa ATCC 842
BGC0001638.4	0.41	ribosomal	klebsazolicin	Klebsiella pneumoniae subsp. ozaenae
BGC0000551.5	0.41	ribosomal	SapB	Streptomyces coelicolor A3(2)
BGC0000504.5	0.40	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000501.3	0.40	ribosomal	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000626.3	0.40	ribosomal	thuricin	Bacillus thuringiensis
BGC0000500.5	0.40	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0002698.2	0.39	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566
BGC0000521.3	0.39	ribosomal	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000539.5	0.39	ribosomal	nukacin ISK-1	Staphylococcus warneri

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002306.2	0.42	ribosomal	freyrasin	Paenibacillus polymyxa ATCC 842
BGC0001638.4	0.41	ribosomal	klebsazolicin	Klebsiella pneumoniae subsp. ozaenae
BGC0000551.5	0.41	ribosomal	SapB	Streptomyces coelicolor A3(2)
BGC0000504.5	0.40	ribosomal	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000501.3	0.40	ribosomal	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000626.3	0.40	ribosomal	thuricin	Bacillus thuringiensis
BGC0000500.5	0.40	ribosomal	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0002698.2	0.39	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566
BGC0000521.3	0.39	ribosomal	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000539.5	0.39	ribosomal	nukacin ISK-1	Staphylococcus warneri

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 21.49 out of 25.88

Confidence: medium

Additional weak hits (4):

DmdR1

Description: Iron(II)-dependent repressor
Species: Streptomyces coelicolor
Score: 23.40 out of 36.53

Confidence: weak

HgtR

Description: Hydrogen-dependent regulator
Species: Geobacter sulfurreducens PCA
Score: 24.60 out of 36.54

Confidence: weak

FuR variant 1

Description: Ferric Uptake Regulator
Species: Bacillus, Pseudomonas, Yersinia sp.
Score: 22.67 out of 29.38

Confidence: weak

HypR

Description: L-hydroxyproline utilization repressor
Species: Streptomyces coelicolor
Score: 18.94 out of 22.40

Confidence: weak

RREFinder

TFBS Finder

RRE predictions

: RRE type: Stand_Alone_Lasso_RRE; Location: 1 - 84; Score: 42.1; RRE type: PqqD_RRE; Location: 6 - 84; Score: 27.8

TFBS definitions

Regulator	Description
PsrA	Oleic acid responsive regulator