LOCUS       NZ_JACICH010000015      2516 bp    DNA     linear   CON 07-MAY-2024
DEFINITION  Xanthomonas euroxanthea strain 2974 Ga0372488_15, whole genome
            shotgun sequence.
ACCESSION   NZ_JACICH010000015
VERSION     NZ_JACICH010000015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Xanthomonas euroxanthea
  ORGANISM  Xanthomonas euroxanthea
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae; Xanthomonas.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Potnis,N.
  TITLE     Studying the diversity of plant-associated saprophytic bacteria and
            their role in host health and plant-pathogen interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Potnis,N., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA 94720,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 312.0x
            Sequencing Technology             :: Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014195725.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 06:44:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,037
            CDSs (total)                      :: 3,960
            Genes (coding)                    :: 3,887
            CDSs (with protein)               :: 3,887
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 22
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 27 of 73
            Pseudo Genes (incomplete)         :: 55 of 73
            Pseudo Genes (internal stop)      :: 9 of 73
            Pseudo Genes (multiple problems)  :: 16 of 73
            ##Genome-Annotation-Data-END##
            ##antiSMASH-Data-START##
            Version                           :: 8.dev-cf2fc5ee(changed)
            Run date                          :: 2025-09-12 22:54:55
            NOTE :: This is a single region extracted from a larger record!
            Orig. start                       :: 0
            Orig. end                         :: 2516
            ##antiSMASH-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            JACICH010000015.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2516
                     /country="USA"
                     /db_xref="taxon:2259622"
                     /isolation_source="Rain"
                     /mol_type="genomic DNA"
                     /organism="Xanthomonas euroxanthea"
                     /strain="2974"
                     /submitter_seqid="Ga0372488_15"
     gene            <1..>2516
                     /locus_tag="FHY13_RS20020"
                     /old_locus_tag="FHY13_004096"
     region          1..2516
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="NRPS"
                     /region_number="1"
                     /rules="cds(Condensation and (AMP-binding or A-OX) and not
                     alpha_am_amid)"
                     /tool="antismash"
     cand_cluster    1..2516
                     /SMILES=""
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="cds(Condensation and (AMP-binding or
                     A-OX) and not alpha_am_amid)"
                     /kind="single"
                     /product="NRPS"
                     /protoclusters="1"
                     /tool="antismash"
     protocluster    1..2516
                     /aStool="rule-based-clusters"
                     /category="NRPS"
                     /contig_edge="True"
                     /core_location="[0:>2516](+)"
                     /cutoff="20000"
                     /detection_rule="cds(Condensation and (AMP-binding or A-OX)
                     and not alpha_am_amid)"
                     /neighbourhood="20000"
                     /product="NRPS"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      1..>2516
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="cds(Condensation and (AMP-binding or A-OX)
                     and not alpha_am_amid)"
                     /neighbourhood="20000"
                     /product="NRPS"
                     /protocluster_number="1"
     CDS             1..>2516
                     /GO_function="GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /NRPS_PKS="Domain: PCP (129-196). E-value: 1.9e-17. Score:
                     55.2. Matches aSDomain: nrpspksdomains_FHY13_RS20020_PCP.1"
                     /NRPS_PKS="Domain: Condensation_LCL (226-526). E-value:
                     2.9e-90. Score: 294.2. Matches aSDomain:
                     nrpspksdomains_FHY13_RS20020_Condensation_LCL.1"
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters) NRPS:
                     Condensation"
                     /gene_functions="biosynthetic (rule-based-clusters) NRPS:
                     AMP-binding"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) PP-binding"
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1127: condensation domain-containing protein"
                     /gene_kind="biosynthetic"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /locus_tag="FHY13_RS20020"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="FHY13_004096"
                     /product="condensation domain-containing protein"
                     /protein_id="WP_184364088.1"
                     /sec_met_domain="PP-binding (E-value: 9.4e-15, bitscore:
                     41.2, seeds: 164, tool: rule-based-clusters)"
                     /sec_met_domain="Condensation (E-value: 1.3e-67, bitscore:
                     214.1, seeds: 42, tool: rule-based-clusters)"
                     /sec_met_domain="AMP-binding (E-value: 4.2e-25, bitscore:
                     74.2, seeds: 400, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MHDIHGRLLFLGRSDRQIKLNGHRIELGEIEKTLLALEGVTHVVA
                     GVHRQPGASDMVYACAAVSDAADASALLTALRQRLPAYMVPSRLLVTRAVPLTVSGKVD
                     HAAILAALSDQATEQTHRTPETALQQAVATLWEEQFQRTKIGLDDDFFSVGGHSIAAIR
                     FIARFNALFSADVALVVLLDHPQLEAFCRQVDAEGALEYRGQAQPPSTHLLQATLPLSV
                     HPDDEGPLSFAQSRLVFLQLLDPASSQYNMPYAYRIDAALGLSALRRALEWLVERHAIL
                     RTGIHLVNGEPVQRIHPAGEVDLGVHDLRHLRVEDAEGVLATTLQQCIRVPFRLAQGRM
                     LRSDVFQMPDQRTVLLLNLHHIASDGWSMGIVLGELSTAYAAFADQGRAPALPSLPLRY
                     LDVAAWEHSRVRGDDDADIAYWQQQLADAQDLATLPLDRPATDAPTGEGDTLMLALPDG
                     LANALRGLSREEGASRYAVSLAAFAACLARWSGRQQVSVGTPTANREDVATHSLVGFFV
                     NMLVMRLDVNEADSFRQLVRMAKRVSREAQAHQGVPYQQLVERLTPSQRMQRSALFQIV
                     FSYETAEEASQPIRFGGHAAVMEPLPHRTAKFDLTVNMVESGDELLLVAEYASDVFERA
                     RIEAICAQYRDTLETVLSAPDVALAALFAPAQLQEALPVARHCSADLFARLQAHPPQAI
                     ALQGETVLDYATLLAKVERLAVRLRLRGQGLGSVVGLLIEERATLIVAMLACLRTGVAF
                     LVLDADYPPARLRYMLENGRSACLLRQGAVPPLTALQVLDLDAPDSDAVGTPGPVTDGA
                     VSSILHTSGSTGEPKAVALPVSGLIQ"
     CDS_motif       28..93
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0001"
                     /evalue="2.90E-11"
                     /label="NRPS-A_a8"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="31"
                     /protein_start="9"
                     /score="35.3"
                     /tool="antismash"
                     /translation="FLGRSDRQIKLNGHRIELGEIE"
     CDS_motif       289..405
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0002"
                     /evalue="5.70E+00"
                     /label="C2_LCL_024-062"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="135"
                     /protein_start="96"
                     /score="-0.5"
                     /tool="antismash"
                     /translation="LTVSGKVDHAAILAALSDQATEQTHRTPETALQQAVATL"
     aSDomain        388..588
                     /aSDomain="PCP"
                     /aSTool="nrps_pks_domains"
                     /database="nrpspksdomains.hmm"
                     /detection="hmmscan"
                     /domain_id="nrpspksdomains_FHY13_RS20020_PCP.1"
                     /evalue="1.90E-17"
                     /label="FHY13_RS20020_PCP.1"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="196"
                     /protein_start="129"
                     /score="55.2"
                     /tool="antismash"
                     /translation="QAVATLWEEQFQRTKIGLDDDFFSVGGHSIAAIRFIARFNALFSA
                     DVALVVLLDHPQLEAFCRQVDA"
     aSDomain        679..1578
                     /aSDomain="Condensation"
                     /aSTool="nrps_pks_domains"
                     /database="nrpspksdomains.hmm"
                     /detection="hmmscan"
                     /domain_id="nrpspksdomains_FHY13_RS20020_Condensation_LCL.1
                     "
                     /domain_subtypes="Condensation_LCL"
                     /evalue="2.90E-90"
                     /label="FHY13_RS20020_Condensation_LCL.1"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="526"
                     /protein_start="226"
                     /score="294.2"
                     /specificity="C activity: active"
                     /specificity="Active site motif: HHIASDG"
                     /tool="antismash"
                     /translation="EGPLSFAQSRLVFLQLLDPASSQYNMPYAYRIDAALGLSALRRAL
                     EWLVERHAILRTGIHLVNGEPVQRIHPAGEVDLGVHDLRHLRVEDAEGVLATTLQQCIR
                     VPFRLAQGRMLRSDVFQMPDQRTVLLLNLHHIASDGWSMGIVLGELSTAYAAFADQGRA
                     PALPSLPLRYLDVAAWEHSRVRGDDDADIAYWQQQLADAQDLATLPLDRPATDAPTGEG
                     DTLMLALPDGLANALRGLSREEGASRYAVSLAAFAACLARWSGRQQVSVGTPTANREDV
                     ATHSLVGFFVNMLVMRLDV"
     CDS_motif       745..855
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0003"
                     /evalue="1.40E-13"
                     /label="C2_LCL_024-062"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="285"
                     /protein_start="248"
                     /score="43.2"
                     /tool="antismash"
                     /translation="QYNMPYAYRIDAALGLSALRRALEWLVERHAILRTGI"
     CDS_motif       1075..1140
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0004"
                     /evalue="4.70E-12"
                     /label="C3_LCL_132-143"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="380"
                     /protein_start="358"
                     /score="38.3"
                     /tool="antismash"
                     /translation="LHHIASDGWSMGIVLGELSTAY"
     CDS_motif       1489..1569
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0005"
                     /evalue="8.80E-13"
                     /label="C5_LCL_267-296"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="523"
                     /protein_start="496"
                     /score="40.6"
                     /tool="antismash"
                     /translation="VGTPTANREDVATHSLVGFFVNMLVMR"
     CDS_motif       1618..1737
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0006"
                     /evalue="9.90E-14"
                     /label="C67_LCL_14fromHMM"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="579"
                     /protein_start="539"
                     /score="43.6"
                     /tool="antismash"
                     /translation="KRVSREAQAHQGVPYQQLVERLTPSQRMQRSALFQIVFSY"
     CDS_motif       2446..2493
                     /aSTool="nrps_pks_domains"
                     /database="abmotifs"
                     /detection="hmmscan"
                     /domain_id="nrpspksmotif_FHY13_RS20020_0007"
                     /evalue="2.90E-05"
                     /label="NRPS-A_a3"
                     /locus_tag="FHY13_RS20020"
                     /protein_end="831"
                     /protein_start="815"
                     /score="16.8"
                     /tool="antismash"
                     /translation="ILHTSGSTGEPKAVAL"
ORIGIN
        1 cggcacgaca tccatggccg gttgctgttc ctgggccgca gtgatcggca gatcaagctc
       61 aacggccacc gcatcgaact gggcgagatc gagaagaccc tactcgcctt ggagggtgtg
      121 actcacgtgg ttgcgggcgt gcatcgccaa cccggcgcaa gcgacatggt ctatgcctgc
      181 gccgccgtct cagacgcagc cgacgcctcc gcattgctga cagcgctgcg tcagcgactg
      241 ccggcctaca tggtgcctag ccgcttgctg gtgacgaggg ctgtgccgtt gacggtgtcg
      301 ggcaaggtcg accatgctgc gatcctagcc gcgctgtccg atcaggcaac cgagcagact
      361 catcgcacgc cggaaaccgc gctgcaacag gcagtggcca cgctctggga agaacagttc
      421 cagcggacga agatcggcct ggacgacgac ttcttctcgg tcggtgggca ctcgatcgca
      481 gcgattcgct tcattgcccg cttcaatgcc ctgttcagtg ccgatgtcgc cctggtcgtg
      541 ctgctcgatc atccgcagct ggaagcgttc tgtcgtcagg tggatgccga aggcgcgctg
      601 gagtatcgcg gacaggccca gcccccgtcg acgcacctgc tgcaggcgac gctgccgctg
      661 tcggtgcacc ctgacgatga aggtccgctg tcgtttgcgc agtcgcgtct ggtgtttctg
      721 caactgctgg accccgcgtc cagccaatac aacatgccgt atgcgtatcg gatcgacgcg
      781 gcattgggtc tgtctgcgct gcgccgggca ctggagtggc tggtggagcg ccatgccatc
      841 ctgcgtaccg gtatccacct agtcaatgga gaaccggtgc aacggattca tcccgccggg
      901 gaggtggacc tcggtgtgca cgacctgcgc cacctgcggg ttgaagatgc cgaaggtgtt
      961 ctggcaacca cgttgcagca gtgcatccgc gtaccgttcc ggctcgcaca agggcgcatg
     1021 ctgcgcagcg atgtgttcca gatgcccgat cagcggaccg tgttgctgct gaacctgcat
     1081 cacatcgcca gcgatggctg gtcgatgggc atcgtactcg gcgaactgtc cacggcatac
     1141 gctgcttttg ctgaccaagg tcgtgcaccg gcactgccaa gcctgccgtt gcgctatctg
     1201 gatgttgcgg catgggagca cagccgcgtg cgtggtgacg atgatgcgga cattgcttat
     1261 tggcagcagc agctggccga tgctcaggat ctcgccacac tgccactgga tcgtccggcc
     1321 accgatgcgc cgaccggtga gggcgatacg ctgatgctgg cgttgccgga tgggctggcc
     1381 aatgccctgc gcggcctgtc gcgggaggag ggggccagcc gctacgcggt gtccttggcc
     1441 gcctttgctg catgcctggc acgctggagc ggacgccagc aggtcagcgt gggcacgccc
     1501 accgcaaatc gcgaagacgt cgcaacccat tcgctggtgg gctttttcgt caacatgctg
     1561 gtgatgcggc tggacgtgaa cgaggcggac agcttccgac agttggtccg gatggcaaag
     1621 cgtgtctcgc gggaggcaca ggcgcaccag ggcgtacctt accaacagtt ggtcgaacgg
     1681 ctgacgccca gccagcggat gcagcgctcg gccctgttcc agatcgtgtt ttcctacgag
     1741 actgccgaag aggccagcca gccgattcgg ttcgggggac atgccgcagt gatggagccg
     1801 ctgccgcacc ggaccgccaa gttcgacctc acggtgaaca tggtcgagag cggtgatgaa
     1861 ctgttgctcg tggccgagta cgcatcggac gtattcgagc gcgcacgcat cgaagcgatc
     1921 tgcgcgcagt accgcgacac gctggagaca gtgctgtccg caccggacgt tgcgctggct
     1981 gcattgttcg cgccggcgca actgcaggag gcactgccgg tggctcgcca ctgcagcgcc
     2041 gacctgtttg cgcgtctgca ggcgcatccg ccacaggcga tcgccctgca gggcgaaacc
     2101 gtgctggact acgccacgct gttggcgaag gtggagcggc tggctgtacg cctgcggctg
     2161 cgcggccagg ggctgggctc ggtggtgggc ttgctgatcg aagagcgggc cacgctgatc
     2221 gtggcgatgt tggcctgcct gcgcaccggc gtggcgttcc tggtgctgga tgcggactat
     2281 cctccggcac ggttgcgcta catgctcgaa aacggccgca gtgcttgcct actgcggcag
     2341 ggggcggtac cgccgctgac cgcgttgcag gtgctggatc tggacgcgcc ggatagcgat
     2401 gccgtgggca ccccggggcc ggtgaccgac ggggcggtgt cttcgatatt gcacacctcc
     2461 ggctccaccg gcgagcccaa ggcggtggcg ctgccggtca gcgggttgat ccagca
//
