INFO     13/09 14:04:14   antiSMASH version: 8.dev-cf2fc5ee(changed)
INFO     13/09 14:04:14   diamond using executable: /usr/bin/diamond-aligner (2.1.3)
INFO     13/09 14:04:14   hmmpfam2 using executable: /usr/bin/hmm2pfam (2.3.2)
INFO     13/09 14:04:14   fasttree using executable: /usr/bin/fasttree
INFO     13/09 14:04:16   hmmsearch using executable: /usr/bin/hmmsearch (3.3.2)
INFO     13/09 14:04:16   hmmpress using executable: /usr/bin/hmmpress (3.3.2)
INFO     13/09 14:04:17   hmmscan using executable: /usr/bin/hmmscan (3.3.2)
INFO     13/09 14:04:17   meme using executable: /usr/bin/meme (4.11.2)
INFO     13/09 14:04:17   fimo using executable: /usr/bin/fimo (4.11.2)
INFO     13/09 14:04:17   prodigal using executable: /usr/bin/prodigal (V2.6.3)
INFO     13/09 14:04:17   blastp using executable: /usr/bin/blastp (2.12.0+)
INFO     13/09 14:04:17   makeblastdb using executable: /usr/bin/makeblastdb (2.12.0+)
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.detection.hmm_detection
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/hmm_detection/data/bgc_seeds.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.detection.genefunctions
DEBUG    13/09 14:04:17   Found file '/databases/resfam/Resfams.hmm'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/extras.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/extras.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/extras.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/extras.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/halogenases/data/FDH.hmm'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/halogenases/data/FDH.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/halogenases/data/FDH.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/halogenases/data/FDH.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/halogenases/data/FDH.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/databases/mite/1.3/metadata.json'
DEBUG    13/09 14:04:17   Found file '/databases/mite/1.3/mite.fasta'
DEBUG    13/09 14:04:17   Found file '/databases/mite/1.3/mite.db.dmnd'
DEBUG    13/09 14:04:17   Found file '/databases/mite/1.3/mite.db.dmnd'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/smcogs.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/smcogs.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/smcogs.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/genefunctions/tools/data/smcogs.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/databases/resfam/Resfams.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/databases/resfam/Resfams.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/databases/resfam/Resfams.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/databases/resfam/Resfams.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.detection.nrps_pks_domains
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/abmotifs.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/abmotifs.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/abmotifs.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/abmotifs.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/dockingdomains.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/dockingdomains.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/dockingdomains.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/dockingdomains.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/ksdomains.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/ksdomains.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/ksdomains.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/ksdomains.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/nrpspksdomains.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/nrpspksdomains.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/nrpspksdomains.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/detection/nrps_pks_domains/data/nrpspksdomains.hmm.h3p'
DEBUG    13/09 14:04:17   Found file '/databases/nrps_pks/transATor/2023.02.23/transATor.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/databases/nrps_pks/transATor/2023.02.23/transATor.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/databases/nrps_pks/transATor/2023.02.23/transATor.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/databases/nrps_pks/transATor/2023.02.23/transATor.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.active_site_finder
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-KR.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-KS_N.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-KS_C.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-AT.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-ACP.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-DH.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/Thioesterase.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/PKSI-ER.hmm2'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/active_site_finder/data/p450.hmm2'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.cluster_compare
DEBUG    13/09 14:04:17   Found file '/databases/clustercompare/mibig/4.0/data.json'
DEBUG    13/09 14:04:17   Found file '/databases/clustercompare/mibig/4.0/proteins.fasta'
DEBUG    13/09 14:04:17   Found file '/databases/clustercompare/mibig/4.0/proteins.dmnd'
DEBUG    13/09 14:04:17   Found file '/databases/clustercompare/mibig/4.0/proteins.dmnd'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.clusterblast
DEBUG    13/09 14:04:17   Found file '/databases/knownclusterblast/4.0/clusters.txt'
DEBUG    13/09 14:04:17   Found file '/databases/knownclusterblast/4.0/proteins.fasta'
DEBUG    13/09 14:04:17   Found file '/databases/knownclusterblast/4.0/proteins.dmnd'
DEBUG    13/09 14:04:17   Found file '/databases/knownclusterblast/4.0/proteins.dmnd'
DEBUG    13/09 14:04:17   Found file '/databases/clusterblast/clusters.txt'
DEBUG    13/09 14:04:17   Found file '/databases/clusterblast/proteins.fasta'
DEBUG    13/09 14:04:17   Found file '/databases/clusterblast/proteins.dmnd'
DEBUG    13/09 14:04:17   Found file '/databases/clusterblast/proteins.dmnd'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/clusterblast/data/sub/proteins.fasta'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/clusterblast/data/sub/proteins.fasta.phr'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/clusterblast/data/sub/proteins.fasta.pin'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/clusterblast/data/sub/proteins.fasta.psq'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/clusterblast/data/sub/clusters.txt'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.lanthipeptides
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.pdb'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.phr'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.pin'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.pot'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.psq'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.ptf'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/asdb/4.0/cores.fa.pto'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.pdb'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.phr'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.pin'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.pot'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.psq'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.ptf'
DEBUG    13/09 14:04:17   Found file '/databases/comparippson/mibig/4.0/cores.fa.pto'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.lassopeptides
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.nrps_pks
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/data/terminals/cterm.fasta
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/data/terminals/nterm.fasta
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/at_analysis/data/AT_domains_muscle.fasta
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/c_analysis/data/Rausch_C_203.fa
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/kr_analysis/data/KRdomains_muscle.fasta
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/minowa/data/AT_domains_muscle.fasta
DEBUG    13/09 14:04:17   Found existing cache for /usr/local/lib/python3.11/dist-packages/antismash/modules/nrps_pks/minowa/data/CAL_domains_muscle.fasta
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.rrefinder
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/rrefinder/data/RREFam.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/rrefinder/data/RREFam.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/rrefinder/data/RREFam.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/rrefinder/data/RREFam.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.sactipeptides
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.t2pks
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/KSIII.fasta'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/KSIII.phr'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/KSIII.pin'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/KSIII.psq'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/AT.fasta'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/AT.phr'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/AT.pin'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/AT.psq'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/LIG.fasta'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/LIG.phr'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/LIG.pin'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/LIG.psq'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/t2pks.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/t2pks.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/t2pks.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/t2pks/data/t2pks.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.terpene
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/terpene/data/all_profiles.hmm'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/terpene/data/all_profiles.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/terpene/data/all_profiles.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/terpene/data/all_profiles.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/terpene/data/all_profiles.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.thiopeptides
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/thiopeptides/data/thiopep3.hmm.h3f'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/thiopeptides/data/thiopep3.hmm.h3i'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/thiopeptides/data/thiopep3.hmm.h3m'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/modules/thiopeptides/data/thiopep3.hmm.h3p'
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.modules.tta
DEBUG    13/09 14:04:17   Checking prerequisites for antismash.outputs.html
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/outputs/html/css/bacteria.css'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/outputs/html/css/fungi.css'
DEBUG    13/09 14:04:17   Found file '/usr/local/lib/python3.11/dist-packages/antismash/outputs/html/css/plants.css'
DEBUG    13/09 14:04:17   Checking options for antismash.detection.hmm_detection
DEBUG    13/09 14:04:18   Checking options for antismash.detection.genefunctions
DEBUG    13/09 14:04:18   Checking options for antismash.detection.nrps_pks_domains
DEBUG    13/09 14:04:18   Checking options for antismash.modules.active_site_finder
DEBUG    13/09 14:04:18   Checking options for antismash.modules.cluster_compare
DEBUG    13/09 14:04:18   Checking options for antismash.modules.clusterblast
DEBUG    13/09 14:04:18   Checking options for antismash.modules.lanthipeptides
DEBUG    13/09 14:04:18   Checking options for antismash.modules.lassopeptides
DEBUG    13/09 14:04:18   Checking options for antismash.modules.nrps_pks
DEBUG    13/09 14:04:18   Checking options for antismash.modules.rrefinder
DEBUG    13/09 14:04:18   Checking options for antismash.modules.sactipeptides
DEBUG    13/09 14:04:18   Checking options for antismash.modules.t2pks
DEBUG    13/09 14:04:18   Checking options for antismash.modules.terpene
DEBUG    13/09 14:04:18   Checking options for antismash.modules.thiopeptides
DEBUG    13/09 14:04:18   Checking options for antismash.modules.tta
DEBUG    13/09 14:04:18   Checking options for antismash.outputs.html
DEBUG    13/09 14:04:18   Attempting to reuse previous results in: /input/GCF_005161125.1.json.gz
DEBUG    13/09 14:04:27   Removing existing region genbank files
DEBUG    13/09 14:04:27   Reusing output directory: /output/GCF_005161125.1
DEBUG    13/09 14:04:27   Preprocessing 1 sequences
DEBUG    13/09 14:04:27   Removing sequences smaller than 1000 bases
INFO     13/09 14:04:27   Analysing record: NZ_CP035431.1
INFO     13/09 14:04:27   Detecting secondary metabolite clusters
DEBUG    13/09 14:04:27   Regenerating results for antismash.detection.hmm_detection
DEBUG    13/09 14:04:27   Checking if antismash.detection.hmm_detection should be run
INFO     13/09 14:04:27   Running antismash.detection.hmm_detection
DEBUG    13/09 14:04:27   5 protoclusters found
DEBUG    13/09 14:04:27   0 subregions found
INFO     13/09 14:04:27   5 region(s) detected in record
DEBUG    13/09 14:04:27   Regenerating results for antismash.detection.genefunctions
DEBUG    13/09 14:04:27   Checking if antismash.detection.genefunctions should be run
INFO     13/09 14:04:27   Running antismash.detection.genefunctions
DEBUG    13/09 14:04:27   Adding detection results from antismash.detection.genefunctions to record
DEBUG    13/09 14:04:27   annotating CDS features with extras info: 0 CDSes
DEBUG    13/09 14:04:27   annotating CDS features with halogenases info: 0 CDSes
DEBUG    13/09 14:04:27   annotating CDS features with MITE info: 0 CDSes
DEBUG    13/09 14:04:27   annotating CDS features with resist info: 0 CDSes
DEBUG    13/09 14:04:27   annotating CDS features with smcogs info: 28 CDSes
DEBUG    13/09 14:04:27   Regenerating results for antismash.detection.nrps_pks_domains
DEBUG    13/09 14:04:27   Checking if antismash.detection.nrps_pks_domains should be run
INFO     13/09 14:04:27   Running antismash.detection.nrps_pks_domains
DEBUG    13/09 14:04:27   Marking NRPS/PKS CDS features and domains in clusters
DEBUG    13/09 14:04:27   Adding detection results from antismash.detection.nrps_pks_domains to record
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.active_site_finder
DEBUG    13/09 14:04:27   Checking if antismash.modules.active_site_finder should be run
INFO     13/09 14:04:27   Running antismash.modules.active_site_finder
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.cluster_compare
DEBUG    13/09 14:04:27   Checking if antismash.modules.cluster_compare should be run
INFO     13/09 14:04:27   Running antismash.modules.cluster_compare
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.clusterblast
DEBUG    13/09 14:04:27   Regenerating clusterblast subresults: subcluster
DEBUG    13/09 14:04:27   Regenerating clusterblast subresults: knowncluster
DEBUG    13/09 14:04:27   Checking if antismash.modules.clusterblast should be run
INFO     13/09 14:04:27   Running antismash.modules.clusterblast
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.lanthipeptides
DEBUG    13/09 14:04:27   Reusing Lanthipeptide results: 0 clusters contained 0 total motifs
DEBUG    13/09 14:04:27   Checking if antismash.modules.lanthipeptides should be run
INFO     13/09 14:04:27   Running antismash.modules.lanthipeptides
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.lassopeptides
DEBUG    13/09 14:04:27   Checking if antismash.modules.lassopeptides should be run
INFO     13/09 14:04:27   Running antismash.modules.lassopeptides
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.nrps_pks
DEBUG    13/09 14:04:27   Checking if antismash.modules.nrps_pks should be run
INFO     13/09 14:04:27   Running antismash.modules.nrps_pks
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.rrefinder
DEBUG    13/09 14:04:27   Checking if antismash.modules.rrefinder should be run
INFO     13/09 14:04:27   Running antismash.modules.rrefinder
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.sactipeptides
DEBUG    13/09 14:04:27   Checking if antismash.modules.sactipeptides should be run
INFO     13/09 14:04:27   Running antismash.modules.sactipeptides
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.t2pks
DEBUG    13/09 14:04:27   Checking if antismash.modules.t2pks should be run
INFO     13/09 14:04:27   Running antismash.modules.t2pks
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.terpene
DEBUG    13/09 14:04:27   Checking if antismash.modules.terpene should be run
INFO     13/09 14:04:27   Running antismash.modules.terpene
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.tfbs_finder
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.thiopeptides
DEBUG    13/09 14:04:27   Reusing Thiopeptide results: 0 clusters contained 0 total motifs
DEBUG    13/09 14:04:27   Checking if antismash.modules.thiopeptides should be run
INFO     13/09 14:04:27   Running antismash.modules.thiopeptides
DEBUG    13/09 14:04:27   Regenerating results for antismash.modules.tta
DEBUG    13/09 14:04:27   Checking if antismash.modules.tta should be run
INFO     13/09 14:04:27   Running antismash.modules.tta
INFO     13/09 14:04:27   Writing results
DEBUG    13/09 14:04:27   Writing json results to '/output/GCF_005161125.1/GCF_005161125.1.json'
DEBUG    13/09 14:04:27   Record NZ_CP035431.1 has results for modules: hmm_detection, genefunctions, nrps_pks_domains, active_site_finder, cluster_compare, clusterblast, lanthipeptides, lassopeptides, nrps_pks, rrefinder, sactipeptides, t2pks, terpene, tfbs_finder, thiopeptides
DEBUG    13/09 14:04:27   Converting antismash.detection.hmm_detection results to json
DEBUG    13/09 14:04:27   Converting antismash.detection.genefunctions results to json
DEBUG    13/09 14:04:27   Converting antismash.detection.nrps_pks_domains results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.active_site_finder results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.cluster_compare results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.clusterblast results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.lanthipeptides results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.lassopeptides results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.nrps_pks results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.rrefinder results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.sactipeptides results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.t2pks results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.terpene results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.tfbs_finder results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.thiopeptides results to json
DEBUG    13/09 14:04:27   Converting antismash.modules.tta results to json
DEBUG    13/09 14:04:30   Annotating record NZ_CP035431.1 with results from: hmm_detection, genefunctions, nrps_pks_domains, active_site_finder, cluster_compare, clusterblast, lanthipeptides, lassopeptides, nrps_pks, rrefinder, sactipeptides, t2pks, terpene, tfbs_finder, thiopeptides, tta
DEBUG    13/09 14:04:30    Adding results from antismash.modules.active_site_finder
DEBUG    13/09 14:04:30    Adding results from antismash.modules.cluster_compare
DEBUG    13/09 14:04:30    Adding results from antismash.modules.clusterblast
DEBUG    13/09 14:04:30    Adding results from antismash.modules.lanthipeptides
DEBUG    13/09 14:04:30    Adding results from antismash.modules.lassopeptides
DEBUG    13/09 14:04:30    Adding results from antismash.modules.nrps_pks
DEBUG    13/09 14:04:30    Adding results from antismash.modules.rrefinder
DEBUG    13/09 14:04:30    Adding results from antismash.modules.sactipeptides
DEBUG    13/09 14:04:30    Adding results from antismash.modules.t2pks
DEBUG    13/09 14:04:30    Adding results from antismash.modules.terpene
DEBUG    13/09 14:04:30    Adding results from antismash.modules.tfbs_finder
DEBUG    13/09 14:04:30    Adding results from antismash.modules.thiopeptides
DEBUG    13/09 14:04:30    Adding results from antismash.modules.tta
DEBUG    13/09 14:04:30   Writing non-HTML output files
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.detection.hmm_detection
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.detection.genefunctions
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.detection.nrps_pks_domains
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.modules.active_site_finder
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.modules.cluster_compare
DEBUG    13/09 14:04:30    Writing relevant output files for antismash.modules.clusterblast
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.lanthipeptides
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.lassopeptides
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.nrps_pks
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.rrefinder
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.sactipeptides
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.t2pks
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.terpene
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.tfbs_finder
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.thiopeptides
DEBUG    13/09 14:04:35    Writing relevant output files for antismash.modules.tta
DEBUG    13/09 14:04:35   Creating results page
DEBUG    13/09 14:04:36   Results page using antismash.js from local copy: /databases/as-js/0.16/antismash.js
DEBUG    13/09 14:05:46   Writing cluster-specific genbank files
DEBUG    13/09 14:05:47   Writing final genbank file to '/output/GCF_005161125.1/GCF_005161125.1.gbk'
DEBUG    13/09 14:05:47   Zipping output to '/output/GCF_005161125.1/GCF_005161125.1.zip'
