GCF_002932635.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NZ_PSVY01000001.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1.1	lanthipeptide-class-iii	20,364	42,865
Region 1.2	terpene-precursor	84,788	105,888

NZ_PSVY01000011.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 3.1	T3PKS	6,600	47,715

NZ_PSVY01000016.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 8.1	lanthipeptide-class-v	45,390	68,218

NZ_PSVY01000003.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 23.1	NAPAA	17,116	51,054	High	ε-Poly-L-lysine	NRPS:Type I

NZ_PSVY01000004.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 34.1	terpene	128,856	153,063	Low	carotenoid	terpene

NZ_PSVY01000008.1 (Rathayibacter sp. AY1D1)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 66.1	RRE-containing	54,398	74,706

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1.1	lanthipeptide-class-iii	20,364	42,865
Region 1.2	terpene-precursor	84,788	105,888
Region 3.1	T3PKS	6,600	47,715
Region 8.1	lanthipeptide-class-v	45,390	68,218
Region 23.1	NAPAA	17,116	51,054	High	ε-Poly-L-lysine	NRPS:Type I
Region 34.1	terpene	128,856	153,063	Low	carotenoid	terpene
Region 66.1	RRE-containing	54,398	74,706

No secondary metabolite regions were found in these records:: NZ_PSVY01000010.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000012.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000013.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000014.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000015.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000017.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000018.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000019.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000002.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000020.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000021.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000022.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000023.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000024.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000025.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000026.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000027.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000028.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000029.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000030.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000031.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000032.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000033.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000034.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000035.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000036.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000037.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000038.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000039.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000040.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000041.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000042.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000043.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000044.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000045.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000046.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000047.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000048.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000049.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000005.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000050.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000051.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000052.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000053.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000054.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000055.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000056.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000057.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000058.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000059.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000006.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000060.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000061.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000062.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000063.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000064.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000065.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000066.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000067.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000007.1 (Rathayibacter sp. AY1D1); NZ_PSVY01000009.1 (Rathayibacter sp. AY1D1)

Compact view

NZ_PSVY01000001.1 - Region 1 - lanthipeptide-class-iii

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Location: 20,364 - 42,865 nt. (total: 22,502 nt) Show pHMM detection rules used

lanthipeptide-class-iii: (micKC and not PKS_KS)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

binding site

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Lanthipeptides

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Translocases: permease

C5C56_RS00160: phenylalanine-specific permease

smcogs: SMCOG1038: phenylalanine-specific permease

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002700.2	0.51	ribosomal	bacinapeptin	Bacillus nakamurai
BGC0000551.5	0.49	ribosomal	SapB	Streptomyces coelicolor A3(2)
BGC0000513.3	0.49	ribosomal	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001226.4	0.49	ribosomal	streptocollin	Streptomyces collinus Tu 365
BGC0000496.5	0.49	ribosomal	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000519.4	0.49	ribosomal	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0002111.3	0.48	ribosomal	andalusicin A, andalusicin B	Bacillus thuringiensis serovar andalousiensis NRRL B-23139
BGC0000501.3	0.48	ribosomal	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000553.3	0.47	ribosomal	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000518.3	0.45	ribosomal	informatipeptin	Streptomyces viridochromogenes DSM 40736

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002700.2	0.51	ribosomal	bacinapeptin	Bacillus nakamurai
BGC0000551.5	0.49	ribosomal	SapB	Streptomyces coelicolor A3(2)
BGC0000513.3	0.49	ribosomal	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001226.4	0.49	ribosomal	streptocollin	Streptomyces collinus Tu 365
BGC0000496.5	0.49	ribosomal	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000519.4	0.49	ribosomal	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0002111.3	0.48	ribosomal	andalusicin A, andalusicin B	Bacillus thuringiensis serovar andalousiensis NRRL B-23139
BGC0000501.3	0.48	ribosomal	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000553.3	0.47	ribosomal	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000518.3	0.45	ribosomal	informatipeptin	Streptomyces viridochromogenes DSM 40736

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptide(s) for C5C56_RS00130

C5C56_RS18210

Leader:

MNRILDFQTLEGEADAHDAAR

Core:

VSTFSVISPCPGWPSSITWGNC

Core with dehydrations:

VDhaDhbFDhaVIDhaPCysPGWPDhaDhaIDhbWGNCys

antiSMASH-DB 4.0 matches for C5C56_RS18210

100.0%

NZ_PSTN01000012.1and 4 others:

NZ_PSVB01000011.1 Lanthipeptides: C5C35_RS17250_lanthipeptideNZ_PSVH01000006.1 Lanthipeptides: C5C41_RS17635_lanthipeptideNZ_PSVQ01000018.1 Lanthipeptides: C5C50_RS17290_lanthipeptideNZ_PSVY01000001.1 Lanthipeptides: C5C56_RS18210_lanthipeptide

Lanthipeptides: C5B92_RS17685_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

VSTFSVISPCPGWPSSITWGNC

1

VSTFSVISPCPGWPSSITWGNC

22

95.5%

NZ_PSVM01000028.1:

Lanthipeptides: C5C86_RS17755_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

VSTFSVISPCP WPSSITWGNC

1

VSTFSVISPCPDWPSSITWGNC

22

90.9%

NZ_PSWL01000029.1and 1 other:

NZ_PSWM01000007.1 Lanthipeptides: C5D44_RS17985_lanthipeptide

Lanthipeptides: C5D08_RS17095_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

VSTFS++SPCPGWPSSITWGNC

1

VSTFSIVSPCPGWPSSITWGNC

22

with 4 more sequence matches

77.3%

NZ_CP004350.1and 1 other:

NZ_CP025330.1 Lanthipeptides: allorf_3183636_3183779_lanthipeptide

Lanthipeptides: allorf_2515666_2515809_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

VST SVI PCPGWPS++T+GNC

1

VSTVSVIPPCPGWPSAVTFGNC

22

66.7%

NZ_CP007153.1:

Lanthipeptides: allorf_02389419_02389625_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

VST S+ +PCPGWPS+ TWGNC

3

VSTLSIEAPCPGWPSTFTWGNC

24

59.1%

NZ_RZJP01000001.1and 2 others:

NZ_RZUG01000019.1 Lanthipeptides: EMO92_RS12090_lanthipeptideNZ_RZUH01000002.1 Lanthipeptides: EMO91_RS13855_lanthipeptide

Lanthipeptides: EMB92_RS11810_lanthipeptide

1

VSTFSVISPCPGWPSSITWGNC

22

+STFS PCPG PS++T+ NC

1

ISTFSFNGPCPGLPSTLTYSNC

22

31.8%

NZ_MSKU01000037.1:

Lanthipeptides: allorf_43371_43508_lanthipeptide

10

CPGWPSSITWGNC

22

C GWPS++T C

9

CWGWPSAVTTRYC

21

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Transcription Factor Binding Sites

Binding sites found:

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 16.38 out of 19.26

Confidence: medium

Additional weak hits (7):

ArgR

Description: Regulator of arginine biosynthesis genes
Species: Streptomyces coelicolor
Score: 17.27 out of 20.01

Confidence: weak

HgtR

Description: Hydrogen-dependent regulator
Species: Geobacter sulfurreducens PCA
Score: 18.83 out of 36.54

Confidence: weak

CopR

Description: Copper-responsive regulator
Species: Lactococcus lactis subsp. lactis Il1403
Score: 17.69 out of 30.97

Confidence: weak

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 19.34 out of 27.78

Confidence: weak

ArgR

Description: Regulator of arginine biosynthesis genes
Species: Streptomyces coelicolor
Score: 17.22 out of 20.01

Confidence: weak

CopR

Description: Copper-responsive regulator
Species: Lactococcus lactis subsp. lactis Il1403
Score: 17.35 out of 30.97

Confidence: weak

LexA variant 1

Description: Repressor of DNA damage response
Species: Streptomyces coelicolor
Score: 23.04 out of 29.65

Confidence: weak

Lanthipeptides

TFBS Finder

Core peptide predictions

C5C56_RS18210 - Class III

Cleavage pHMM score: 4.60

RODEO score: 0

Monoisotopic mass: 2198.1 Da

Molecular weight: 2199.5 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 2217.5 Da N = 1; 2235.5 Da N = 2; 2253.5 Da N = 3; 2271.6 Da N = 4; 2289.6 Da N = 5

TFBS definitions

Regulator	Description
CRP	Cyclic AMP receptor protein

NZ_PSVY01000001.1 - Region 2 - terpene-precursor

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Location: 84,788 - 105,888 nt. (total: 21,101 nt) Show pHMM detection rules used

terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Transferases: acyltransferase

C5C56_RS00425: acyltransferase

smcogs: SMCOG1141: acyltransferase

Hydrolases: deformylase

C5C56_RS00410: peptide deformylase

smcogs: SMCOG1275: peptide deformylase

Ligases: ligase synthetase

C5C56_RS00415: AMP-dependent synthetase and ligase

smcogs: SMCOG1002: AMP-dependent synthetase and ligase

C5C56_RS00445: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000677.5	0.42	terpene	cyclooctatin	Streptomyces melanosporofaciens
BGC0000649.3	0.40	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001910.4	0.39	terpene	cyslabdan A, cyslabdan B, cyslabdan C	Streptomyces cyslabdanicus
BGC0001456.3	0.39	terpene	isorenieratene	Streptomyces argillaceus
BGC0001483.4	0.38	other (other)	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001911.3	0.38	terpene	raimonol	Streptomyces anulatus
BGC0000664.5	0.38	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000678.5	0.38	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000633.3	0.37	terpene	carotenoid	Streptomyces avermitilis
BGC0002348.2	0.37	NRPS	aspulvinone E	Aspergillus terreus NIH2624

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000677.5	0.42	terpene	cyclooctatin	Streptomyces melanosporofaciens
BGC0000649.3	0.40	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001910.4	0.39	terpene	cyslabdan A, cyslabdan B, cyslabdan C	Streptomyces cyslabdanicus
BGC0001456.3	0.39	terpene	isorenieratene	Streptomyces argillaceus
BGC0001483.4	0.38	other (other)	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0001911.3	0.38	terpene	raimonol	Streptomyces anulatus
BGC0000664.5	0.38	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000678.5	0.38	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893
BGC0000633.3	0.37	terpene	carotenoid	Streptomyces avermitilis
BGC0002348.2	0.37	NRPS	aspulvinone E	Aspergillus terreus NIH2624

Similar known clusters from MIBiG 4.0

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor	FPP	C15	acyclic	PP
diterpene precursor	GGPP	C20	acyclic	PP
sesterterpene precursor	GFPP	C25	acyclic	PP
triterpene precursor	HPP	C30	acyclic	PP

Genes with terpene domains:

C5C56_RS00445: PT_FPPS_like

Domain 1 (45 - 365): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: unknown

Reactions:: IPP, DMAPP → FPP; IPP, DMAPP → GGPP; IPP, DMAPP → GFPP; IPP, DMAPP → HPP

Transcription Factor Binding Sites

No hits above weak threshold.

Weak hits (6):

ClgR

Description: Caseinolytic protease gene regulator
Species: Corynebacterium glutamicum ATCC 13032
Score: 22.68 out of 30.22

Confidence: weak

ClgR

Description: Caseinolytic protease gene regulator
Species: Corynebacterium glutamicum ATCC 13032
Score: 22.68 out of 30.22

Confidence: weak

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 19.06 out of 24.78

Confidence: weak

RutR

Description: Regulator of the pyrimidine and purine metabolism
Species: Escherichia coli str. K-12 substr. MG1655
Score: 19.66 out of 26.85

Confidence: weak

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 19.28 out of 28.19

Confidence: weak

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 17.65 out of 28.19

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
GFPP	Geranylfarnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
HPP	Hexaprenyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description

NZ_PSVY01000011.1 - Region 1 - T3PKS

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Location: 6,600 - 47,715 nt. (total: 41,116 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

NRPS/PKS domains

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: dehydrogenase

C5C56_RS09225: short-chain dehydrogenase/reductase SDR

smcogs: SMCOG1001: short-chain dehydrogenase/reductase SDR

C5C56_RS09335: short-chain dehydrogenase/reductase SDR

smcogs: SMCOG1001: short-chain dehydrogenase/reductase SDR

Hydrolases: esterase hydrolase

C5C56_RS09365: 2`,3`-cyclic-nucleotide 2`-phosphodiesterase

smcogs: SMCOG1283: 2`,3`-cyclic-nucleotide 2`-phosphodiesterase

C5C56_RS09420: alpha/beta hydrolase fold protein

smcogs: SMCOG1036: alpha/beta hydrolase fold protein

Lyases: dehydratase

C5C56_RS09350: NAD-dependent epimerase/dehydratase

smcogs: SMCOG1010: NAD-dependent epimerase/dehydratase

Ligases: synthase

C5C56_RS09330: chalcone and stilbene synthase domain protein

smcogs: SMCOG1024: chalcone and stilbene synthase domain protein

Translocases: permease

C5C56_RS09280: phenylalanine-specific permease

smcogs: SMCOG1038: phenylalanine-specific permease

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.3	0.53	PKS	2-methoxy-5-methyl-6-(13-methyltetradecyl)-1,4-benzoquinone, 2-methoxy-5-methyl-6-(13-methyltetradecyl)phenol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.3	0.52	PKS	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0002332.2	0.50	PKS	4-hydroxy-6-pentadecylpyran-2-one, 4-hydroxy-6-(2-oxoheptadecyl)pyran-2-one, Adipostatin A	Candidatus Entotheonella sp.
BGC0001928.2	0.48	other (other)	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001974.2	0.46	other (other)	kainic acid, Kainic acid lactone	Digenea simplex
BGC0002404.2	0.45	other (other)	falcarindiol	Solanum lycopersicum
BGC0001831.3	0.45	PKS	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001987.2	0.43	PKS	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000671.3	0.43	terpene	momilactone B	Oryza sativa Japonica Group
BGC0002362.3	0.43	PKS	loseolamycin A1, loseolamycin A2	Micromonospora endolithica

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.3	0.53	PKS	2-methoxy-5-methyl-6-(13-methyltetradecyl)-1,4-benzoquinone, 2-methoxy-5-methyl-6-(13-methyltetradecyl)phenol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.3	0.52	PKS	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0002332.2	0.50	PKS	4-hydroxy-6-pentadecylpyran-2-one, 4-hydroxy-6-(2-oxoheptadecyl)pyran-2-one, Adipostatin A	Candidatus Entotheonella sp.
BGC0001928.2	0.48	other (other)	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0001974.2	0.46	other (other)	kainic acid, Kainic acid lactone	Digenea simplex
BGC0002404.2	0.45	other (other)	falcarindiol	Solanum lycopersicum
BGC0001831.3	0.45	PKS	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001987.2	0.43	PKS	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000671.3	0.43	terpene	momilactone B	Oryza sativa Japonica Group
BGC0002362.3	0.43	PKS	loseolamycin A1, loseolamycin A2	Micromonospora endolithica

Similar known clusters from MIBiG 4.0

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

NtrC

Description: Nitrogen regulatory protein C
Species: Pseudomonas putida KT2440
Score: 21.87 out of 29.72

Confidence: medium

Additional weak hits (6):

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 15.93 out of 19.26

Confidence: weak

ArcA

Description: Repressor of carbon oxidation
Species: Escherichia coli str. K-12 substr. MG1655
Score: 14.41 out of 21.55

Confidence: weak

HgtR

Description: Hydrogen-dependent regulator
Species: Geobacter sulfurreducens PCA
Score: 20.77 out of 36.54

Confidence: weak

HexR

Description: Glucose-responsive regulator
Species: Shewanella oneidensis MR-1
Score: 20.00 out of 31.73

Confidence: weak

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 19.52 out of 28.19

Confidence: weak

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 17.51 out of 24.78

Confidence: weak

Detailed domain annotation

Selected features only

Show module domains

TFBS Finder

TFBS definitions

Regulator	Description
NtrC	Nitrogen regulatory protein C

NZ_PSVY01000016.1 - Region 1 - lanthipeptide-class-v

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Location: 45,390 - 68,218 nt. (total: 22,829 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-v: (APH and HopA1)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

resistance

TTA codons

binding site

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Gene overview

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Lanthipeptides

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: oxidoreductase

C5C56_RS11310: FAD dependent oxidoreductase

smcogs: SMCOG1103: FAD dependent oxidoreductase

Transferases: phosphotransferase

C5C56_RS11335: Glucose-specific phosphotransferase enzyme IIA

smcogs: SMCOG1145: Glucose-specific phosphotransferase enzyme IIA

Isomerases: mutase

C5C56_RS11350: phosphoglycerate mutase

smcogs: SMCOG1101: phosphoglycerate mutase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002303.3	0.44	ribosomal	pristinin A3	Streptomyces pristinaespiralis
BGC0000590.5	0.40	ribosomal	microcin N	Escherichia coli
BGC0000626.3	0.40	ribosomal	thuricin	Bacillus thuringiensis
BGC0000541.5	0.40	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0002110.3	0.39	ribosomal	birimositide	Streptomyces rimosus subsp. rimosus WC-3908
BGC0000523.3	0.39	ribosomal	lactocin S	Lactobacillus sakei
BGC0002323.2	0.39	ribosomal	nisin J	Staphylococcus capitis
BGC0000582.4	0.39	ribosomal	cypemycin	Streptomyces sp. OH-4156
BGC0000555.3	0.39	ribosomal	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001485.4	0.39	other (other)	chuangxinmycin	Actinoplanes tsinanensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002303.3	0.44	ribosomal	pristinin A3	Streptomyces pristinaespiralis
BGC0000590.5	0.40	ribosomal	microcin N	Escherichia coli
BGC0000626.3	0.40	ribosomal	thuricin	Bacillus thuringiensis
BGC0000541.5	0.40	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0002110.3	0.39	ribosomal	birimositide	Streptomyces rimosus subsp. rimosus WC-3908
BGC0000523.3	0.39	ribosomal	lactocin S	Lactobacillus sakei
BGC0002323.2	0.39	ribosomal	nisin J	Staphylococcus capitis
BGC0000582.4	0.39	ribosomal	cypemycin	Streptomyces sp. OH-4156
BGC0000555.3	0.39	ribosomal	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0001485.4	0.39	other (other)	chuangxinmycin	Actinoplanes tsinanensis

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Transcription Factor Binding Sites

No hits above weak threshold.

Weak hits (5):

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 16.68 out of 29.25

Confidence: weak

MexT

Description: Global virulence regulator
Species: Pseudomonas aeruginosa PAO1
Score: 16.40 out of 21.84

Confidence: weak

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 21.65 out of 29.25

Confidence: weak

LexA variant 3

Description: Repressor of DNA damage response
Species: Escherichia coli str. K-12 substr. MG1655
Score: 18.55 out of 32.93

Confidence: weak

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 16.28 out of 28.19

Confidence: weak

Lanthipeptides

TFBS Finder

Core peptide predictions

No core peptides found.

TFBS definitions

Regulator	Description

NZ_PSVY01000003.1 - Region 1 - NAPAA

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Location: 17,116 - 51,054 nt. (total: 33,939 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

NRPS/PKS modules

NRPS/PKS domains

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: dehydrogenase

C5C56_RS03120: short-chain dehydrogenase/reductase SDR

smcogs: SMCOG1001: short-chain dehydrogenase/reductase SDR

Transferases: PPTase aminotransferase

C5C56_RS03130: 4'-phosphopantetheinyl transferase

smcogs: SMCOG1012: 4'-phosphopantetheinyl transferase

C5C56_RS03150: aminotransferase class V

smcogs: SMCOG1139: aminotransferase class V

Ligases: ligase

C5C56_RS03140: AMP-dependent synthetase and ligase

smcogs: SMCOG1002: AMP-dependent synthetase and ligase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002174.2	0.77	NRPS	ε-Poly-L-lysine	Epichloe festucae
BGC0001135.5	0.61	NRPS	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000307.4	0.60	NRPS	AbT1	Aureobasidium pullulans
BGC0000357.5	0.60	NRPS	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001240.4	0.60	NRPS	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0001833.4	0.59	NRPS	icosalide A, icosalide B	Burkholderia gladioli
BGC0001250.4	0.59	NRPS	epichloenin A	Epichloe festucae
BGC0001641.4	0.59	NRPS	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001128.4	0.59	NRPS	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001251.4	0.59	NRPS	epichloenin A	Epichloe festucae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002174.2	0.77	NRPS	ε-Poly-L-lysine	Epichloe festucae
BGC0001135.5	0.61	NRPS	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000307.4	0.60	NRPS	AbT1	Aureobasidium pullulans
BGC0000357.5	0.60	NRPS	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001240.4	0.60	NRPS	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0001833.4	0.59	NRPS	icosalide A, icosalide B	Burkholderia gladioli
BGC0001250.4	0.59	NRPS	epichloenin A	Epichloe festucae
BGC0001641.4	0.59	NRPS	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001128.4	0.59	NRPS	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001251.4	0.59	NRPS	epichloenin A	Epichloe festucae

Similar known clusters from MIBiG 4.0

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

AbrC3

Description: Antibiotic production activator
Species: Streptomyces coelicolor
Score: 18.16 out of 18.16

Confidence: strong

Additional weak hits (8):

FuR variant 1

Description: Ferric Uptake Regulator
Species: Bacillus, Pseudomonas, Yersinia sp.
Score: 15.98 out of 29.38

Confidence: weak

CRP

Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 15.49 out of 19.26

Confidence: weak

ANR

Description: Anaerobic transcriptional regulator
Species: Pseudomonas putida KT2440
Score: 20.06 out of 26.33

Confidence: weak

ArcA

Description: Repressor of carbon oxidation
Species: Escherichia coli str. K-12 substr. MG1655
Score: 14.84 out of 21.55

Confidence: weak

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 20.89 out of 33.73

Confidence: weak

NrtR

Description: NAD synthesis repressor
Species: Streptomyces coelicolor
Score: 22.95 out of 35.63

Confidence: weak

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 18.72 out of 24.78

Confidence: weak

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 19.13 out of 28.19

Confidence: weak

Module view

Legend

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS substrates

TFBS Finder

Predicted core structure(s)

For candidate cluster 1, location 17115 - 51054:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

C5C56_RS03140: X

AMP-binding (27..417): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: FAELFDASCEELSTIFGGEWNTYGPTEATVVACA
Nearest Stachelhaus code(s):: Lys DAEDIGTVVK (71% 8Å match); Gln or Tyr DAESVGTVVK (65% 8Å match)
Stachelhaus code match:: 90% (moderate)

Link to PARAS substrate predictor

TFBS definitions

Regulator	Description
AbrC3	Antibiotic production activator

NZ_PSVY01000004.1 - Region 1 - terpene

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Location: 128,856 - 153,063 nt. (total: 24,208 nt) Show pHMM detection rules used

terpene: (PT_phytoene_like or phytoene_synt or Lycopene_cycl or Lycopene_cycl_fung or T1TS or T1TS_KS or T2TS or TS_UbiA or TS_Pyr4)

Legend:

core biosynthetic genes

additional biosynthetic genes

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resistance

TTA codons

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KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Oxidoreductases: dehydrogenase

C5C56_RS04660: dehydrogenase

smcogs: SMCOG1222: dehydrogenase

Hydrolases: hydrolase

C5C56_RS04705: beta-lactamase

smcogs: SMCOG1053: beta-lactamase

Ligases: synthetase

C5C56_RS04665: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000644.3	0.65	terpene	carotenoid	Dietzia sp. CQ4
BGC0000637.3	0.59	terpene	carotenoid	Corynebacterium glutamicum
BGC0000664.5	0.53	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000650.3	0.51	terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000649.3	0.49	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.3	0.49	terpene	carotenoid	Myxococcus xanthus
BGC0002309.2	0.46	terpene	cattleyene	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0000636.3	0.46	terpene	carotenoid	Brevibacterium linens
BGC0000677.5	0.45	terpene	cyclooctatin	Streptomyces melanosporofaciens
BGC0001911.3	0.43	terpene	raimonol	Streptomyces anulatus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000644.3	0.65	terpene	carotenoid	Dietzia sp. CQ4
BGC0000637.3	0.59	terpene	carotenoid	Corynebacterium glutamicum
BGC0000664.5	0.53	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000650.3	0.51	terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000649.3	0.49	terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000648.3	0.49	terpene	carotenoid	Myxococcus xanthus
BGC0002309.2	0.46	terpene	cattleyene	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0000636.3	0.46	terpene	carotenoid	Brevibacterium linens
BGC0000677.5	0.45	terpene	cyclooctatin	Streptomyces melanosporofaciens
BGC0001911.3	0.43	terpene	raimonol	Streptomyces anulatus

Similar known clusters from MIBiG 4.0

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Subclass	Product name	Chain length	Initial cyclisations	Functional groups
tetraterpene	C40 carotenoid		C40	unknown	unknown

Genes with terpene domains:

C5C56_RS04650: Lycopene_cycl

Domain 1 (1 - 92): Lycopene cyclase

Reactions:: C40_carotenoid → C40_carotenoid

C5C56_RS04655: Lycopene_cycl

Domain 1 (4 - 91): Lycopene cyclase

Reactions:: C40_carotenoid → C40_carotenoid

C5C56_RS04660: PT_phytoene_like

Domain 1 (13 - 289): Prenyltransferase; Phytoene synthase like

Subtype: unknown

Reactions:: FPP → PSPP; FPP → diapophytoene; FPP → squalene; GGPP → phytoene; PSPP → hydroxysqualene

C5C56_RS04665: PT_FPPS_like

Domain 1 (17 - 302): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: unknown

Reactions:: IPP, DMAPP → FPP; IPP, DMAPP → GGPP; IPP, DMAPP → GFPP; IPP, DMAPP → HPP

Transcription Factor Binding Sites

Binding sites found:

VqsM

Description: Regulator of quorum-sensing signalling systems
Species: Pseudomonas aeruginosa PAO1
Score: 19.46 out of 20.47

Confidence: strong

IolR

Description: Regulator of the inositol catabolism
Species: Caulobacter crescentus CB15
Score: 18.33 out of 23.79

Confidence: medium

Additional weak hits (3):

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 20.11 out of 33.73

Confidence: weak

HipB

Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 20.42 out of 33.73

Confidence: weak

LexA variant 3

Description: Repressor of DNA damage response
Species: Escherichia coli str. K-12 substr. MG1655
Score: 18.61 out of 32.93

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
GFPP	Geranylfarnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
HPP	Hexaprenyl diphosphate
IPP	Isopentenyl diphosphate
PSPP	Presqualene diphosphate

TFBS definitions

Regulator	Description
IolR	Regulator of the inositol catabolism
VqsM	Regulator of quorum-sensing signalling systems

NZ_PSVY01000008.1 - Region 1 - RRE-containing

Download region GenBank file

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Location: 54,398 - 74,706 nt. (total: 20,309 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

binding site

reset view

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Transferases: glycosyltransferase

C5C56_RS07910: glycosyl transferase group 1

smcogs: SMCOG1045: glycosyl transferase group 1

C5C56_RS07915: glycosyl transferase group 1

smcogs: SMCOG1045: glycosyl transferase group 1

C5C56_RS07940: sugar transferase

smcogs: SMCOG1146: sugar transferase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000742.3	0.48	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000743.3	0.48	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000740.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000746.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000747.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000748.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000741.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000744.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000745.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0001410.3	0.44	saccharide	polysaccharide A	Bacteroides fragilis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000742.3	0.48	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000743.3	0.48	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000740.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000746.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000747.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000748.3	0.46	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000741.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000744.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000745.3	0.44	saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0001410.3	0.44	saccharide	polysaccharide A	Bacteroides fragilis

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

No hits above weak threshold.

Weak hits (1):

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 18.85 out of 28.19

Confidence: weak

RREFinder

TFBS Finder

RRE predictions

: RRE type: Stand_Alone_Lasso_RRE; Location: 43 - 98; Score: 35.1

TFBS definitions

Regulator	Description