GCF_002204405.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NZ_NHRV01000001.1 (Prevotella intermedia)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1.1	RRE-containing	16,980	37,372
Region 1.2	lanthipeptide-class-i	1,336,847	1,365,659

NZ_NHRV01000002.1 (Prevotella intermedia)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 2.1	terpene-precursor	1	19,175
Region 2.2	resorcinol	538,274	579,410

Region	Type	From	To	Most similar known cluster
Region 1.1	RRE-containing	16,980	37,372
Region 1.2	lanthipeptide-class-i	1,336,847	1,365,659
Region 2.1	terpene-precursor	1	19,175
Region 2.2	resorcinol	538,274	579,410

No secondary metabolite regions were found in these records:: NZ_NHRV01000003.1 (Prevotella intermedia); NZ_NHRV01000004.1 (Prevotella intermedia); NZ_NHRV01000005.1 (Prevotella intermedia)

Compact view

NZ_NHRV01000001.1 - Region 1 - RRE-containing

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Location: 16,980 - 37,372 nt. (total: 20,393 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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binding site

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MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

No tailoring functions detected.

Similar gene clusters

Analysis type:

Reference	RRE-containing	Similarity score	Type	Compound(s)	Organism
BGC0002294.3		0.20	other (other)	streptozotocin	Streptomyces achromogenes subsp. streptozoticus

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0002294.3		0.20	other (other)	streptozotocin	Streptomyces achromogenes subsp. streptozoticus

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

LexA variant 3

Description: Repressor of DNA damage response
Species: Escherichia coli str. K-12 substr. MG1655
Score: 24.09 out of 32.93

Confidence: medium

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 20.59 out of 25.88

Confidence: medium

Additional weak hits (3):

NtrC

Description: Nitrogen regulatory protein C
Species: Pseudomonas putida KT2440
Score: 21.04 out of 29.72

Confidence: weak

MntR

Description: Manganese transport regulator
Species: Escherichia coli str. K-12 substr. MG1655
Score: 24.62 out of 39.62

Confidence: weak

NrtR

Description: NAD synthesis repressor
Species: Streptomyces coelicolor
Score: 23.36 out of 35.63

Confidence: weak

RREFinder

TFBS Finder

RRE predictions

: RRE type: Stand_Alone_Lasso_RRE; Location: 32 - 89; Score: 30.4

TFBS definitions

Regulator	Description
LexA variant 3	Repressor of DNA damage response
PsrA	Oleic acid responsive regulator

NZ_NHRV01000001.1 - Region 2 - lanthipeptide-class-i

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Location: 1,336,847 - 1,365,659 nt. (total: 28,813 nt) Show pHMM detection rules used

lanthipeptide-class-i: (((Lant_dehydr_N or Lant_dehydr_C) and cds(LANC_like and not Pkinase)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

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Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Lanthipeptides

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Lyases: cyclase dehydratase

CBG55_RS05850: Lantibiotic dehydratase domain protein

smcogs: SMCOG1155: Lantibiotic dehydratase domain protein

CBG55_RS05855: Lanthionine synthetase C family protein

smcogs: SMCOG1140: Lanthionine synthetase C family protein

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002576.2	0.72	ribosomal	mechercharmycin	Thermoactinomyces sp.
BGC0002640.2	0.69	ribosomal	thalassomonasin A, thalassomonasin B	Thalassomonas actiniarum
BGC0000541.5	0.53	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0000542.3	0.53	ribosomal	paenicidin B	Paenibacillus terrae
BGC0000590.5	0.51	ribosomal	microcin N	Escherichia coli
BGC0001210.5	0.47	ribosomal	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000626.3	0.47	ribosomal	thuricin	Bacillus thuringiensis
BGC0001229.4	0.47	ribosomal	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0001311.5	0.47	ribosomal	flavecins	Ruminococcus flavefaciens FD-1
BGC0002698.2	0.46	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002576.2	0.72	ribosomal	mechercharmycin	Thermoactinomyces sp.
BGC0002640.2	0.69	ribosomal	thalassomonasin A, thalassomonasin B	Thalassomonas actiniarum
BGC0000541.5	0.53	ribosomal	paenicidin A	Paenibacillus polymyxa
BGC0000542.3	0.53	ribosomal	paenicidin B	Paenibacillus terrae
BGC0000590.5	0.51	ribosomal	microcin N	Escherichia coli
BGC0001210.5	0.47	ribosomal	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000626.3	0.47	ribosomal	thuricin	Bacillus thuringiensis
BGC0001229.4	0.47	ribosomal	SBI-06990 A1, SBI-06989 A2	Streptomyces bingchenggensis BCW-1
BGC0001311.5	0.47	ribosomal	flavecins	Ruminococcus flavefaciens FD-1
BGC0002698.2	0.46	ribosomal	phaeornamide	Pseudophaeobacter arcticus DSM 23566

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Lanthipeptide predictions

Lanthipeptide(s) for CBG55_RS05845

CBG55_RS13215

Leader:

MKKLRKLVLKKDVITSLGKTEQAN

Core:

LKGGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPTLRCQV

Core with dehydrations:

LKGGMDhaAGCysDhaDGCysLDhaAWGHDhbRIWNCysDhaKADCysDhbHDCysGHCysGDPDhbWDhbADhaGDCysPDhbLRCysQV

antiSMASH-DB 4.0 matches for CBG55_RS13215

100.0%

NZ_NHRV01000001.1and 1 other:

NZ_NHRV01000001.1 Lanthipeptides: allorf_1351556_1351795_lanthipeptide

Lanthipeptides: allorf_1351556_1351795_lanthipeptide

LKGGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPTLRCQV

41.8%

NZ_FWXM01000003.1:

Lanthipeptides: B8967_RS11230_lanthipeptide

GGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHC

G +AGCSDGCLS + HT + NCSKA+CT DCG+C

GLFTAGCSDGCLSNFMHTHVLNCSKANCTADCGNC

38.2%

NZ_CP033931.1and 1 other:

NZ_CP084347.1 Lanthipeptides: KB553_RS22385_lanthipeptide

Lanthipeptides: EG351_RS21210_lanthipeptide

GGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHC

G +AGCSDGC+S + HT + NCSKA+CT DC +C

GLFTAGCSDGCMSQFMHTHLLNCSKANCTADCSNC

with 4 more sequence matches

25.5%

NZ_CP059572.1:

Lanthipeptides: AGRA3207_RS24970_lanthipeptide

SDGCLSAWGHTRIWN---CSKADCTHDCGHCGDP

SDGC+ A T N C+ + C+H CG G P

SDGCVYACDPTWPINSCQCASSGCSHTCGATGRP

21.8%

NZ_CP060723.1and 1 other:

NZ_CP060723.1 Lanthipeptides: H9L23_RS20840_lanthipeptide

Lanthipeptides: H9L23_RS20840_lanthipeptide

SAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPT

+A G T + S D G CG + AS CP

AADGSTFVVGISLEAEAADGGSCGQKSIIASKTCPV

21.8%

NZ_CP062165.1and 1 other:

NZ_LXQN01000019.1 Lanthipeptides: gpAD87_RS32325_lanthipeptide

Lanthipeptides: JNUCC31_RS12820_lanthipeptide

IWNCSKADCTHDCGHCGDPTWTASGDCPT

IWNC+ G CG+ T TA+ PT

IWNCT--------GGCGEQTRTANTCAPT

14.5%

NZ_CP060723.1and 1 other:

NZ_CP060723.1 Lanthipeptides: H9L23_RS20830_lanthipeptide

Lanthipeptides: H9L23_RS20830_lanthipeptide

DCGHCGDPTWTASGDCP

D G+CG T+ S CP

DVGNCGPQTFQVSKTCP

MIBiG 4.0 matches for CBG55_RS13215

9.1%

BGC0002111.3 (EVG22_32245):

Lanthipeptide: andalusicin A or andalusicin B

AWGHTRIWNC

AW T NC

AWASTISNNC

7.3%

BGC0002110.3 (QKV49894.1):

Lanthipeptide: birimositide

CSKADCTHDC

C CT C

CPTTKCTSKC

Lanthipeptide(s) for CBG55_RS05850

CBG55_RS13215

Leader:

MKKLRKLVLKKDVITSLGKTEQAN

Core:

LKGGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPTLRCQV

Core with dehydrations:

LKGGMDhaAGCysDhaDGCysLDhaAWGHDhbRIWNCysDhaKADCysDhbHDCysGHCysGDPDhbWDhbADhaGDCysPDhbLRCysQV

antiSMASH-DB 4.0 matches for CBG55_RS13215

100.0%

NZ_NHRV01000001.1and 1 other:

NZ_NHRV01000001.1 Lanthipeptides: allorf_1351556_1351795_lanthipeptide

Lanthipeptides: allorf_1351556_1351795_lanthipeptide

LKGGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPTLRCQV

41.8%

NZ_FWXM01000003.1:

Lanthipeptides: B8967_RS11230_lanthipeptide

GGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHC

G +AGCSDGCLS + HT + NCSKA+CT DCG+C

GLFTAGCSDGCLSNFMHTHVLNCSKANCTADCGNC

38.2%

NZ_CP033931.1and 1 other:

NZ_CP084347.1 Lanthipeptides: KB553_RS22385_lanthipeptide

Lanthipeptides: EG351_RS21210_lanthipeptide

GGMSAGCSDGCLSAWGHTRIWNCSKADCTHDCGHC

G +AGCSDGC+S + HT + NCSKA+CT DC +C

GLFTAGCSDGCMSQFMHTHLLNCSKANCTADCSNC

with 4 more sequence matches

25.5%

NZ_CP059572.1:

Lanthipeptides: AGRA3207_RS24970_lanthipeptide

SDGCLSAWGHTRIWN---CSKADCTHDCGHCGDP

SDGC+ A T N C+ + C+H CG G P

SDGCVYACDPTWPINSCQCASSGCSHTCGATGRP

21.8%

NZ_CP060723.1and 1 other:

NZ_CP060723.1 Lanthipeptides: H9L23_RS20840_lanthipeptide

Lanthipeptides: H9L23_RS20840_lanthipeptide

SAWGHTRIWNCSKADCTHDCGHCGDPTWTASGDCPT

+A G T + S D G CG + AS CP

AADGSTFVVGISLEAEAADGGSCGQKSIIASKTCPV

21.8%

NZ_CP062165.1and 1 other:

NZ_LXQN01000019.1 Lanthipeptides: gpAD87_RS32325_lanthipeptide

Lanthipeptides: JNUCC31_RS12820_lanthipeptide

IWNCSKADCTHDCGHCGDPTWTASGDCPT

IWNC+ G CG+ T TA+ PT

IWNCT--------GGCGEQTRTANTCAPT

14.5%

NZ_CP060723.1and 1 other:

NZ_CP060723.1 Lanthipeptides: H9L23_RS20830_lanthipeptide

Lanthipeptides: H9L23_RS20830_lanthipeptide

DCGHCGDPTWTASGDCP

D G+CG T+ S CP

DVGNCGPQTFQVSKTCP

MIBiG 4.0 matches for CBG55_RS13215

9.1%

BGC0002111.3 (EVG22_32245):

Lanthipeptide: andalusicin A or andalusicin B

AWGHTRIWNC

AW T NC

AWASTISNNC

7.3%

BGC0002110.3 (QKV49894.1):

Lanthipeptide: birimositide

CSKADCTHDC

C CT C

CPTTKCTSKC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Transcription Factor Binding Sites

Binding sites found:

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 22.99 out of 26.06

Confidence: medium

Additional weak hits (3):

GnfM

Description: Regulator of nitrogen-fixation genes
Species: Geobacter sulfurreducens PCA
Score: 21.05 out of 27.55

Confidence: weak

NuR

Description: Nickel-responsive regulator
Species: Streptomyces coelicolor
Score: 22.10 out of 30.98

Confidence: weak

VqsM

Description: Regulator of quorum-sensing signalling systems
Species: Pseudomonas aeruginosa PAO1
Score: 16.27 out of 20.47

Confidence: weak

Lanthipeptides

TFBS Finder

Core peptide predictions

CBG55_RS13215 - Class I

Cleavage pHMM score: -14.60

RODEO score: 23

Monoisotopic mass: 5574.4 Da

Molecular weight: 5578.2 Da

Number of bridges: 8

Alternative weights: (assuming N unmodified Ser/Thr residues); 5596.2 Da N = 1; 5614.2 Da N = 2

CBG55_RS13215 - Class I

Cleavage pHMM score: -14.60

RODEO score: 23

Monoisotopic mass: 5574.4 Da

Molecular weight: 5578.2 Da

Number of bridges: 8

Alternative weights: (assuming N unmodified Ser/Thr residues); 5596.2 Da N = 1; 5614.2 Da N = 2

TFBS definitions

Regulator	Description
MogR	Repressor of flagellar motility genes

NZ_NHRV01000002.1 - Region 1 - terpene-precursor

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Location: 1 - 19,175 nt. (total: 19,175 nt) Show pHMM detection rules used

Region on contig edge.

terpene-precursor: (PT_FPPS_like and not PT_HPP)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

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Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

Terpene

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Ligases: synthetase

CBG55_RS08875: Polyprenyl synthetase

smcogs: SMCOG1182: Polyprenyl synthetase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002309.2	0.36	terpene	cattleyene	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001911.3	0.30	terpene	raimonol	Streptomyces anulatus
BGC0000634.3	0.28	terpene	carotenoid	Brevundimonas sp. SD212
BGC0000664.5	0.28	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001227.3	0.27	terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000648.3	0.27	terpene	carotenoid	Myxococcus xanthus
BGC0000665.5	0.26	other (other), terpene	xiamycin, indosespene, sespenine, dixiamycin A, dixiamycin B, sulfadixiamycin A, sulfadixiamycin B, sulfadixiamycin C	Streptomyces sp. HKI0576
BGC0000637.3	0.26	terpene	carotenoid	Corynebacterium glutamicum
BGC0002221.2	0.26	terpene	ent-kauren-16alpha-ol	Serpula lacrymans var. lacrymans S7.9
BGC0000678.5	0.26	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002309.2	0.36	terpene	cattleyene	Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0001911.3	0.30	terpene	raimonol	Streptomyces anulatus
BGC0000634.3	0.28	terpene	carotenoid	Brevundimonas sp. SD212
BGC0000664.5	0.28	terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001227.3	0.27	terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000648.3	0.27	terpene	carotenoid	Myxococcus xanthus
BGC0000665.5	0.26	other (other), terpene	xiamycin, indosespene, sespenine, dixiamycin A, dixiamycin B, sulfadixiamycin A, sulfadixiamycin B, sulfadixiamycin C	Streptomyces sp. HKI0576
BGC0000637.3	0.26	terpene	carotenoid	Corynebacterium glutamicum
BGC0002221.2	0.26	terpene	ent-kauren-16alpha-ol	Serpula lacrymans var. lacrymans S7.9
BGC0000678.5	0.26	terpene	pentalenolactone	Streptomyces avermitilis MA-4680 = NBRC 14893

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Detailed terpene predictions

Product predictions:

Class	Product name	Chain length	Initial cyclisations	Functional groups
sesquiterpene precursor	FPP	C15	acyclic	PP
diterpene precursor	GGPP	C20	acyclic	PP
sesterterpene precursor	GFPP	C25	acyclic	PP
triterpene precursor	HPP	C30	acyclic	PP

Genes with terpene domains:

CBG55_RS08875: PT_FPPS_like

Domain 1 (27 - 323): Prenyltransferase; Farnesyl diphosphate synthase like

Subtype: unknown

Reactions:: IPP, DMAPP → FPP; IPP, DMAPP → GGPP; IPP, DMAPP → GFPP; IPP, DMAPP → HPP

Transcription Factor Binding Sites

Binding sites found:

PerR

Description: Peroxide regulator
Species: Bacillus & Staphylococcus sp.
Score: 25.31 out of 28.14

Confidence: medium

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 22.35 out of 26.06

Confidence: medium

MogR

Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 22.93 out of 26.06

Confidence: medium

IolR

Description: Regulator of the inositol catabolism
Species: Caulobacter crescentus CB15
Score: 19.51 out of 23.79

Confidence: medium

LexA variant 2

Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 21.43 out of 24.78

Confidence: medium

Additional weak hits (4):

PerR

Description: Peroxide regulator
Species: Bacillus & Staphylococcus sp.
Score: 22.11 out of 28.14

Confidence: weak

CopR

Description: Copper-responsive regulator
Species: Lactococcus lactis subsp. lactis Il1403
Score: 23.25 out of 30.97

Confidence: weak

CopR

Description: Copper-responsive regulator
Species: Lactococcus lactis subsp. lactis Il1403
Score: 24.05 out of 30.97

Confidence: weak

LuxO

Description: Repressor of luminescence
Species: Vibrio campbellii ATCC BAA-1116
Score: 20.68 out of 26.12

Confidence: weak

Terpene

TFBS Finder

Glossary

Acronym	Full name
DMAPP	Dimethylallyl diphosphate
FPP	Farnesyl diphosphate
GFPP	Geranylfarnesyl diphosphate
GGPP	Geranylgeranyl diphosphate
HPP	Hexaprenyl diphosphate
IPP	Isopentenyl diphosphate
PP	Diphosphate

TFBS definitions

Regulator	Description
IolR	Regulator of the inositol catabolism
LexA variant 2	Repressor of DNA damage response
MogR	Repressor of flagellar motility genes
PerR	Peroxide regulator

NZ_NHRV01000002.1 - Region 2 - resorcinol

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Location: 538,274 - 579,410 nt. (total: 41,137 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

binding site

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

Tailoring

MIBiG comparison

KnownClusterBlast

SubClusterBlast

TFBS Finder

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Tailoring functions

Ligases: synthase

CBG55_RS11425: 3-oxoacyl-(acyl carrier protein) synthase III

smcogs: SMCOG1084: 3-oxoacyl-(acyl carrier protein) synthase III

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001526.4	0.32	other (other)	bartoloside E, bartoloside F, bartoloside G, bartoloside H, bartoloside I, bartoloside J, bartoloside K	Synechocystis salina LEGE 06099
BGC0001525.3	0.30	other (other)	bartoloside B, bartoloside C, bartoloside D	Synechocystis salina LEGE 06155
BGC0000838.3	0.20	PKS	flexirubin	Flavobacterium johnsoniae UW101

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001526.4	0.32	other (other)	bartoloside E, bartoloside F, bartoloside G, bartoloside H, bartoloside I, bartoloside J, bartoloside K	Synechocystis salina LEGE 06099
BGC0001525.3	0.30	other (other)	bartoloside B, bartoloside C, bartoloside D	Synechocystis salina LEGE 06155
BGC0000838.3	0.20	PKS	flexirubin	Flavobacterium johnsoniae UW101

Similar known clusters from MIBiG 4.0

No significant matches found.

Similar subclusters

No significant matches found.

Transcription Factor Binding Sites

Binding sites found:

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 21.57 out of 25.88

Confidence: medium

CodY

Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 21.21 out of 27.78

Confidence: medium

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 20.99 out of 25.88

Confidence: medium

PsrA

Description: Oleic acid responsive regulator
Species: Pseudomonas sp.
Score: 21.57 out of 25.88

Confidence: medium

ZuR variant 1

Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 21.26 out of 28.19

Confidence: medium

Additional weak hits (3):

SypG

Description: Regulator of biofilm formation and host colonization
Species: Vibrio fischeri ES114
Score: 21.45 out of 29.25

Confidence: weak

ColR

Description: Phenol-responsive regulator
Species: Pseudomonas putida KT2440
Score: 21.55 out of 30.25

Confidence: weak

FuR variant 1

Description: Ferric Uptake Regulator
Species: Bacillus, Pseudomonas, Yersinia sp.
Score: 21.91 out of 29.38

Confidence: weak

TFBS Finder

TFBS definitions

Regulator	Description
CodY	Regulator of stationary phase and virulence in Gram-positive bacteria
PsrA	Oleic acid responsive regulator
ZuR variant 1	Zinc-responsive repressor