LOCUS       NZ_KN150942            10912 bp    DNA     linear   CON 15-JAN-2024
DEFINITION  Burkholderia pseudomallei strain BFD scaffold2, whole genome shotgun
            sequence.
ACCESSION   NZ_KN150942
VERSION     NZ_KN150942.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia pseudomallei
  ORGANISM  Burkholderia pseudomallei
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Burkholderia; pseudomallei group.
REFERENCE   1  (bases 1 to 4082027)
  AUTHORS   Daligault,H.E., Davenport,K.W., Minogue,T.D., Bishop-Lilly,K.A.,
            Broomall,S.M., Bruce,D.C., Chain,P.S., Coyne,S.R., Frey,K.G.,
            Gibbons,H.S., Jaissle,J., Koroleva,G.I., Ladner,J.T., Lo,C.C.,
            Munk,C., Palacios,G.F., Redden,C.L., Rosenzweig,C.N., Scholz,M.B.
            and Johnson,S.L.
  TITLE     Whole-genome assemblies of 56 burkholderia species
  JOURNAL   Genome Announc 2 (6), e01106-14 (2014)
   PUBMED   25414490
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082027)
  AUTHORS   Bishop-Lilly,K.A., Broomall,S.M., Chain,P.S., Chertkov,O.,
            Coyne,S.R., Daligault,H.E., Davenport,K.W., Erkkila,T., Frey,K.G.,
            Gibbons,H.S., Gu,W., Jaissle,J., Johnson,S.L., Koroleva,G.I.,
            Ladner,J.T., Lo,C.-C., Minogue,T.D., Munk,C., Palacios,G.F.,
            Redden,C.L., Rosenzweig,C.N., Scholz,M.B., Teshima,H. and Xu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2014) Bioscience, Los Alamos National Laboratory,
            P.O. Box 1663, MS M888, Los Alamos, NM 87545, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2013
            Assembly Method :: Newbler v. 2.6; Velvet v. 1.2.08; AllPaths v.
            44837; phredPhrap v. SPS - 4.24
            Assembly Name                     :: BFD
            Genome Coverage                   :: 304.0x
            Sequencing Technology             :: 454; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/15/2024 02:34:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,650
            CDSs (total)                      :: 6,571
            Genes (coding)                    :: 6,399
            CDSs (with protein)               :: 6,399
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 172
            CDSs (without protein)            :: 172
            Pseudo Genes (ambiguous residues) :: 0 of 172
            Pseudo Genes (frameshifted)       :: 87 of 172
            Pseudo Genes (incomplete)         :: 122 of 172
            Pseudo Genes (internal stop)      :: 22 of 172
            Pseudo Genes (multiple problems)  :: 48 of 172
            ##Genome-Annotation-Data-END##
            ##antiSMASH-Data-START##
            Version                           :: 8.dev-cf2fc5ee(changed)
            Run date                          :: 2025-09-12 20:41:10
            NOTE :: This is a single region extracted from a larger record!
            Orig. start                       :: 3885003
            Orig. end                         :: 3895915
            ##antiSMASH-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KN150942.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     region          1..10912
                     /candidate_cluster_numbers="1"
                     /contig_edge="False"
                     /product="RiPP-like"
                     /region_number="6"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))"
                     /tool="antismash"
     cand_cluster    1..10912
                     /candidate_cluster_number="1"
                     /contig_edge="False"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     protocluster    1..10912
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="False"
                     /core_location="[5000:5912](-)"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      complement(5001..5912)
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     gene            complement(107..>448)
                     /locus_tag="DP56_RS31140"
                     /old_locus_tag="DP56_2867"
                     /pseudo=""
     CDS             complement(107..>448)
                     /codon_start=1
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1163: rhodanese domain-containing protein"
                     /gene_kind="biosynthetic-additional"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011326331.1"
                     /locus_tag="DP56_RS31140"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2867"
                     /product="rhodanese-like domain-containing protein"
                     /pseudo=""
                     /transl_table=11
                     /translation="FHARDSMEPVSRNELTTRLADGLVTLLDVRPHDEFAQGHLPGALN
                     IPLAALEARLSELPADTEIVAYCRGPYRVLAFEAVTALRARGFKAARLEGGFPEWKAAG
                     LVVETGAAD"
     gene            complement(618..>1074)
                     /locus_tag="DP56_RS39420"
                     /pseudo=""
     CDS             complement(618..>1074)
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611812.1"
                     /locus_tag="DP56_RS39420"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /product="DDE-type integrase/transposase/recombinase"
                     /pseudo=""
                     /transl_table=11
                     /translation="VIDVFARRIVGWRVSSSMSTDFVLDALGQALYARQPGDDGTLIHP
                     PIGGSIRQHSVQRTFGRGGYRAVRRPPWRQLR"
     misc_feature    complement(619..621)
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     gene            complement(<1075..>1448)
                     /locus_tag="DP56_RS42405"
                     /pseudo=""
     CDS             complement(<1075..1448)
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006492556.1"
                     /locus_tag="DP56_RS42405"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /product="transposase"
                     /pseudo=""
                     /transl_table=11
                     /translation="MYRGSQPIAMLRVVRSDGMRGGQRVKQRSDSDGSAVEYARYEDRK
                     MLAAARRPIYAAASEETARQALQDFADGPWGAKYPTIVHSWQRAWGHVVPFYVFPFRRR
                     FGGSFIRTR"
     gene            1814..2359
                     /locus_tag="DP56_RS31145"
                     /old_locus_tag="DP56_2869"
     CDS             1814..2359
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_function="GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /GO_process="GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /gene_functions="regulatory (smcogs) SMCOG1032: RNA
                     polymerase, sigma-24 subunit, ECF subfamily"
                     /gene_kind="regulatory"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009973413.1"
                     /locus_tag="DP56_RS31145"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2869"
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="WP_004527029.1"
                     /transl_table=11
                     /translation="MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQF
                     DADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIARYKLMDFFRTRARREALHDPLDD
                     HTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVK
                     VSIHRGLKALAARVRGVV"
     gene            2356..2997
                     /locus_tag="DP56_RS31150"
                     /old_locus_tag="DP56_2870"
     CDS             2356..2997
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009973414.1"
                     /locus_tag="DP56_RS31150"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2870"
                     /product="DUF1109 domain-containing protein"
                     /protein_id="WP_004527028.1"
                     /transl_table=11
                     /translation="MKTNDFIDMLAAGVTPVERGVPARRLGSALAVAAVGAVLLMTIAF
                     GVRPDLSAVMRTPIFWAKLAFPICVAAGAIMATVRLARPGATVGAGRLVVGVGIAAVWI
                     AGLYAVATAAFGDRLAVVLGQTWRVCPFNIVLLSAPGFVAMFVAIRGLAPTRLRTAGAA
                     AGLAASAIATIAYCFHCPEMSPAFWGVWYLLGMALPAALGALVAPIWLRW"
     gene            complement(3016..3657)
                     /locus_tag="DP56_RS31155"
                     /old_locus_tag="DP56_2871"
     CDS             complement(3016..3657)
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521489.1"
                     /locus_tag="DP56_RS31155"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2871"
                     /product="DUF1109 domain-containing protein"
                     /protein_id="WP_021251448.1"
                     /transl_table=11
                     /translation="METRDLVTWLATDLTPVDPGAVLQRLYHALLVGFAGSTALLVALY
                     GIRSDMPQLILTTMFWVRFAFPLAVVFSATRLAERLGRPGARLCSVGLATALPVAAMLL
                     ATGGVLIATPPGYRLQLVLGTTWRTTVVDIVLLSLPPLAAALHAMKQLAPTRLVLAGAG
                     AGLLAGAQALVVYSLYCAEMSMPFWGVWYMLSLMLTMALGAMLASIWLRW"
     gene            complement(3723..4226)
                     /locus_tag="DP56_RS31160"
                     /old_locus_tag="DP56_2872"
     CDS             complement(3723..4226)
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527026.1"
                     /locus_tag="DP56_RS31160"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2872"
                     /product="DoxX family protein"
                     /protein_id="WP_004521490.1"
                     /transl_table=11
                     /translation="MSDRHTANRAPLRALTSLVSRVRHGIQWLAHPTLAQFALRLALAV
                     PFWKSGILKWNGFLRLNDTAIDLFTSEFQLHLPGGPYPFPAPAVFAFLSGCGEVLFPVL
                     LALGLGTRFAAAGLFVMTCVVELTVPDGWPIHLTWAAMALGIAAWGPGRLSLDYLLGDR
                     APRS"
     gene            complement(4232..5011)
                     /locus_tag="DP56_RS31165"
                     /old_locus_tag="DP56_2873"
     CDS             complement(4232..5011)
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521491.1"
                     /locus_tag="DP56_RS31165"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2873"
                     /product="DNA-binding domain-containing protein"
                     /protein_id="WP_004521491.1"
                     /transl_table=11
                     /translation="MRSDAAASDYACAFAPGLTNPSIGAPDDAIAHGHKRVARRYDVYR
                     NNVTVSLIEALAAIYPAVQRIVGVEFFRAMARFHVRETLPVSPLLFEYGRDFPDFIAGY
                     EYARTMPWLADTARIERAWLDAYHAADLSTLTADAFTAIPPDALAAVRLVPHPATRIVR
                     SPYPAVSIFAMNRSDGPVTSLHSAEAEDALVTRPAHDVIVSRLPLGGAVFLISLIDGAS
                     LGDAVAITLEDNPAFDLPASLRGMIEAGVFTAIHSGA"
     gene            complement(5001..5912)
                     /locus_tag="DP56_RS31170"
                     /old_locus_tag="DP56_2874"
     CDS             complement(5001..5912)
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: DUF692"
                     /gene_kind="biosynthetic"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004534478.1"
                     /locus_tag="DP56_RS31170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2874"
                     /product="DUF692 domain-containing protein"
                     /protein_id="WP_044369179.1"
                     /sec_met_domain="DUF692 (E-value: 1.4e-86, bitscore: 287.8,
                     seeds: 7, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MSDSVSIAKYMHRDCLHCPAPLVGTSFKPCHFADIVDNGLQDGFF
                     EVHAENYMGKGGPPHRALSALRETYPVSVHGVCLSIGGPSPLDAHHLARFRDVVARYEP
                     VLVSEHLAWSSHGGAFYNDLLPLPYTKATLDRVCAHVDQIQEAIARPLLLENPSTYVGF
                     ASSTMSETEFIAAVAGRTGCGLLLDINNAFVSATNHGCSAADYLANFPLEQVGEIHLAG
                     HSEQRDDEDEPLLIDSHDRPVAGPVWALYASVIARTGPVPTLVEWDSQLPDWPVLRAQA
                     LEARRIMDAAVASPVEVADHAL"
     gene            complement(5946..6257)
                     /locus_tag="DP56_RS31175"
                     /old_locus_tag="DP56_2875"
     CDS             complement(5946..6257)
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521493.1"
                     /locus_tag="DP56_RS31175"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2875"
                     /product="DUF2282 domain-containing protein"
                     /protein_id="WP_004521493.1"
                     /transl_table=11
                     /translation="MSAKLSFHTALLVGAVASLVASGAHAAPLTKAEADAAVAAHKEKC
                     FGVALKGQNDCAAGPGTTCQGTSTVDFQGNSWKFVQGGTCTSIQVPGGGHGSLTPLKS"
     misc_feature    6285..6300
                     /note="TFBS match to CsoR, Copper-responsive repressor,
                     confidence: weak, score: 22.96"
                     /tool="antismash"
     misc_feature    6346..6360
                     /note="TFBS match to CodY, Regulator of stationary phase
                     and virulence in Gram-positive bacteria, confidence: weak,
                     score: 19.89"
                     /tool="antismash"
     gene            6398..>6466
                     /locus_tag="DP56_RS42540"
                     /pseudo=""
     CDS             6398..>6466
                     /codon_start=1
                     /inference="COORDINATES: protein motif:HMM:NF024170.4"
                     /locus_tag="DP56_RS42540"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /product="hypothetical protein"
                     /pseudo=""
                     /transl_table=11
                     /translation="MKRCPECAMSRPYELSDGRYKCR"
     gene            <6546..>6740
                     /locus_tag="DP56_RS39425"
                     /pseudo=""
     CDS             6546..>6740
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611796.1"
                     /locus_tag="DP56_RS39425"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /product="IS30 family transposase"
                     /pseudo=""
                     /transl_table=11
                     /translation="MLVYLPRGKGYGLIPRTKKRTRAGRLRSCQMADALKKTVTDLPVG
                     LWRPLTWDRGRELSDHACFT"
     misc_feature    6558..6560
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     gene            6819..7205
                     /locus_tag="DP56_RS31180"
                     /old_locus_tag="DP56_2876"
     CDS             6819..7205
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /gene_functions="other (smcogs) SMCOG1026: transposase"
                     /gene_kind="other"
                     /inference="COORDINATES: protein motif:HMM:NF012870.4"
                     /locus_tag="DP56_RS31180"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2876"
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="WP_080293927.1"
                     /transl_table=11
                     /translation="MHVLLQQDGCFANHKRICRLYSKAGLSVRKRRRKRIAAVERTPLP
                     LPTGPNQSGSMDFVSDGLAYGRRFRYLNVVGDYTRECLVIAVDTSQPGLRVQQVLERLK
                     EMRGLPASITVDNALNASGMYNAR"
     misc_feature    6954..6956
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     gene            complement(7394..7804)
                     /locus_tag="DP56_RS31185"
                     /old_locus_tag="DP56_2877"
     CDS             complement(7394..7804)
                     /codon_start=1
                     /inference="COORDINATES: protein motif:HMM:NF014430.4"
                     /locus_tag="DP56_RS31185"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2877"
                     /product="IS110 family transposase"
                     /protein_id="WP_004556978.1"
                     /transl_table=11
                     /translation="MTILAEAADLRRLGHHRQFLKYCGFDLAKIQSGTQRGREQLSKRG
                     NARLRLAFWMAGMAAVRMKENSFRSKYERYVHADPDDADLKRKALTAVAAKMARVAYGM
                     IKKNQPYRQFFELGLPSGSIPLSAAVGAQATP"
     misc_feature    complement(7448..7450)
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     gene            complement(8016..8684)
                     /locus_tag="DP56_RS31190"
                     /old_locus_tag="DP56_2878"
     CDS             complement(8016..8684)
                     /GO_function="GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /gene_functions="regulatory (smcogs) SMCOG1071: GntR family
                     transcriptional regulator"
                     /gene_kind="regulatory"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521496.1"
                     /locus_tag="DP56_RS31190"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="DP56_2878"
                     /product="GntR family transcriptional regulator"
                     /protein_id="WP_004521496.1"
                     /transl_table=11
                     /translation="MTSSSNQKNVAERVTEQIRESIVHGNFAPGQRLSEAALSENLQIS
                     RNTLREIFRILTKEGLLKHEPNRGVSVAIPSIATILDIYRVRRLIECQAIAQAYPSHPA
                     KKHLRDAVEMGLRCRDSGDWQGVGTANMEFHMAIVELADSERLNVMFSHVLAELRLAFG
                     MLQDPEFLHGPYVELNLQILQLFESGKLAECATALNDYLAQSERIVLSACARHPVFKAR
                     "
     misc_feature    complement(8079..8081)
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     misc_feature    complement(8743..8756)
                     /note="TFBS match to MogR, Repressor of flagellar motility
                     genes, confidence: weak, score: 19.84"
                     /tool="antismash"
     gene            complement(9164..9900)
                     /locus_tag="DP56_RS41380"
                     /pseudo=""
     CDS             complement(9164..9900)
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012650068.1"
                     /locus_tag="DP56_RS41380"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /product="transposase"
                     /pseudo=""
                     /transl_table=11
                     /translation="MTRCVANWPAYKAGLHAGGVTT"
     misc_feature    complement(9349..9351)
                     /note="tta leucine codon, possible target for bldA
                     regulation"
                     /tool="antismash"
     misc_feature    9902..9916
                     /note="TFBS match to SypG, Regulator of biofilm formation
                     and host colonization, confidence: weak, score: 20.01"
                     /tool="antismash"
     misc_feature    complement(10134..10147)
                     /note="TFBS match to PerR, Peroxide regulator, confidence:
                     weak, score: 17.82"
                     /tool="antismash"
     misc_feature    10195..10210
                     /note="TFBS match to DasR, N-acetylglucosamine dependent
                     repressor, confidence: weak, score: 20.66"
                     /tool="antismash"
     misc_feature    complement(10309..10323)
                     /note="TFBS match to SypG, Regulator of biofilm formation
                     and host colonization, confidence: weak, score: 18.69"
                     /tool="antismash"
     misc_feature    complement(10610..10624)
                     /note="TFBS match to SypG, Regulator of biofilm formation
                     and host colonization, confidence: weak, score: 18.93"
                     /tool="antismash"
ORIGIN
        1 cggacgctcg tcgtgctcga tcgcacgctg gcagcgcatg aaaccggccg ctgatccgcg
       61 aggttgaccg acaggagtgc gatgccgtgc gtcgcttcgg ctcacgtcag tcggcggcgc
      121 cggtctcgac gacgagaccg gccgctttcc attcaggaaa gccgccctcg agacgagcgg
      181 ccttgaagcc tctggcacgc agggcagtca cggcctcgaa tgcaagtaca cggtacgggc
      241 cgcggcaata cgccacgatt tccgtgtcgg ccgggagctc gctcaggcgg gcctccagcg
      301 cggccagcgg gatattgagc gcgcccggca gatgcccttg tgcgaactcg tcatgtgggc
      361 gcacgtccag caaggtgacc agaccgtccg caagacgcgt ggtcagctca tttcgcgata
      421 ccggctccat agaatcgcgc gcatggaaat cgctcgcaac tgcgagaacg acgacgagcg
      481 cttcgccgac gtgcgcgaag cgggagcgcg gccgtcacga gcgcgacggg cgccgcggcc
      541 gatgcgaaga aacgcgccga tgaagccttc gccgcagtcg aagtgaaccg cgccgggaat
      601 cgtggaggcc ggttggttta agttaatgca ggcacttccg cagcatttcc gagttgcctg
      661 tagtagtttg cctcagcgtc ggcaggcggg atgtggccaa gcggttccat cagccgatga
      721 tggttgtacc gggccaccca ttccaggggc gccagttcga cggattgcct cgttttccac
      781 ggggcgcgtc gatgaatcag gtccgtcttg tagaggccgt tgatcgtttc agccggcgcg
      841 ttatcgtagc tgtcgccacg gcggccgacg gacggctcga tacccgcctc ggccaaacgt
      901 tcgctgtacc gaatgctgac gtattgagcc ccctatcggg gggtgtatca aagtcccatc
      961 gtcgcccggt tggcgcgcgt acagcgcctg tccaagcgca tccagaacaa agtccgtgct
     1021 catcgacgaa ctgacgcgcc aaccgacgat gcgacgggca aacacgtcga tcacgatgat
     1081 cttgcgcagt tgggcattca tgcgctctat cgagttcgta taaacgaccc gccgaatctc
     1141 ctgcggaacg gaaatacgta gaacggcacg acgtgccccc acgcgcgttg ccacgaatgc
     1201 acgatcgtcg gatacttcgc gccccaaggt ccgtcggcga agtcttgcag cgcctgccgt
     1261 gccgtctctt cgctggcagc cgcgtagatc ggacgccgcg ctgcggcgag catcttacgg
     1321 tcctcgtagc gggcgtattc gacagcgctt ccatctgaat cggatcgctg cttaacccgt
     1381 tggcctccac gcattccgtc cgacctcaca acgcgcagca ttgcaatggg ttggctacca
     1441 cgatattcta gattgcttga tctaaagttg cttgccgaga catggaggca tgttagcgga
     1501 gcacccggcg cccgagatcg cgatcgaccg tatccaggcg tggggggatc aggattgccc
     1561 cgccgcacgg tatcgtgacg gcaggctcgg ccgatgcatc ggcccaggcg aaacatcgga
     1621 ttgagcaagg aaccgcagca tggacatcgg gtacgggcga gtagcgatca cggatgaatc
     1681 aaacggagcc gctcgcgggc tcacgggtcg gccgcactcg ctggcgctgg cagcgcgatg
     1741 cgtgagcccc ggcgttcggg gcgggacgca gccgcggcaa gatggcctgg tgcgctaggt
     1801 ccggggcccg atcttgcatt ccgtggaatc ccgcttgaga gcgctgttcg tcagcggcct
     1861 cgccggccat gcgccggatt accggtcgtt cctttcggag ctgacccgcc acttgcgcgg
     1921 ctttctccgc aagcggatcc cgcagtttga cgcggacatc gaagatctcg tgcaggagat
     1981 cctgctcgcc gtccataatg cacgtcatac gtatcgcgcg gacgaaccgc tgacggcgtg
     2041 ggtacatgcc atcgcgcgct acaagctgat ggatttcttc cggacgcgcg cccgccgcga
     2101 agcgctgcac gatccgcttg acgatcacac ggacatcttt tccgaacccg acgacgacgc
     2161 gtccgacgcg catcgcgaca tcggcaggct gctggatcat ctgccggaca agcaacggct
     2221 atcgatcctg catgtgaagc tgcagggctt gtcggttgcc gaggcggcgc aactgatcgg
     2281 tgcgtccgaa tccgtcgtca aggtcagcat tcacagggga ctgaaggcgc tcgcggcgcg
     2341 cgtgcgagga gtggtatgaa aacgaacgat ttcatcgaca tgctggcggc gggcgtcaca
     2401 cccgtcgagc gcggcgtccc ggccaggcgc ctgggcagtg cgcttgccgt cgctgcggtg
     2461 ggcgccgtgc tgttgatgac gattgcgttc ggcgtgcgcc ccgatctgtc ggccgtgatg
     2521 cgcacgccga tcttctgggc gaagctcgcg tttccgattt gcgtggcggc aggcgcgatc
     2581 atggcgaccg tacggcttgc ccgccccggc gcgaccgtcg gtgcgggccg gctggtggtc
     2641 ggcgtcggca tcgcggcggt ctggatcgcg ggcctttatg cggtcgcgac ggccgcattc
     2701 ggcgaccggc tcgcggtcgt gctcggtcag acgtggcgcg tgtgtccgtt caacatcgtt
     2761 ctgctgtcgg cgcccggttt cgttgcgatg ttcgtcgcaa tccgggggtt ggcgcccacg
     2821 cggttgcgta ccgcgggcgc ggcggcgggg ctcgccgcga gtgcgatcgc gacgatcgcc
     2881 tactgcttcc actgcccgga aatgagcccg gcattctggg gcgtctggta tctgctcggg
     2941 atggcgttgc cggcggcact cggcgcactc gtcgctccga tctggctgcg ctggtgaggg
     3001 gctggggcgc cgtgcctacc agcgcagcca gatcgaagca agcatcgcac cgagggccat
     3061 cgttagcatg agcgacaaca tgtaccagac accccagaac ggcatcgaca tctcggcgca
     3121 gtagagcgaa tagacgacga gcgcctgtgc gccggcaaga aggccggcgc ccgcgccggc
     3181 gagcacgaga cgcgttggcg cgagttgctt catcgcatgc aacgcggcgg cgagcggcgg
     3241 cagcgacagc agcacgatgt ccacgaccgt ggtccgccac gtcgttccga gcaccagttg
     3301 cagccggtag ccgggcggag tcgcaatcaa cacgccgccc gtggcaagca gcatcgcggc
     3361 aaccggcagc gcggtcgcaa gcccaacgga acacagtcgc gcgccagggc ggccaaggcg
     3421 ctcggcgagc cgcgttgccg agaagacgac ggcgagtggg aacgcgaacc gcacccagaa
     3481 catcgtcgtc aggatcaatt ggggcatatc gctgcggatg ccatacaacg cgacgaggag
     3541 ggcggtgctg ccggcgaagc cgacgaggag cgcgtggtag agccgctgca aaactgcgcc
     3601 ggggtcaacc ggcgtcaggt cggttgccag ccaggtgacc aagtctcggg tttccattgc
     3661 gaagatgcgc aggacgggca gcgttgcgga ccggcacggc ggcgtgttgc cgcgccacgg
     3721 gctcaactgc gcggcgcgcg atcaccgagc agatagtcga gcgagaggcg gcccgggccc
     3781 cacgccgcga taccgagggc cattgccgcc cacgtcagat ggatcggcca gccgtccggc
     3841 accgtcagct cgacaacaca ggtcatcacg aacaggccgg ccgccgcgaa tcgcgtgccg
     3901 aggccgagcg ccagcagtac cgggaacagc acctccccgc agccggacag aaaggcgaac
     3961 acggccggtg cggggaacgg gtatgggccg ccgggcagat gcaactggaa ttcgctcgtg
     4021 aacaaatcga tcgcagtgtc gttgagccgc aggaagccgt tccacttgag aatgccagat
     4081 ttccagaacg gcaccgcaag cgcgagtcgc aatgcgaact gcgcaagcgt cgggtgggcg
     4141 agccactgga taccatgccg cacgcggctg acaagcgagg tgagcgcgcg cagcggcgcg
     4201 cgattggcgg tgtgtcgatc ggacatggcg gtcaggctcc ggaatggatg gcggtaaaca
     4261 cgccggcttc gatcatgccg cgcaagctgg ccgggagatc gaaggcggga ttgtcttcga
     4321 gggtgatcgc gactgcgtcg cctagcgagg caccgtcgat caggctgatc aggaacaccg
     4381 cgccaccgag cggcagccgg gagacgatca cgtcgtgcgc cgggcgcgtg acgagcgcat
     4441 cctcggcttc ggcggagtgc agcgacgtga cggggccatc ggaccggttc atcgcaaaga
     4501 tcgaaacggc aggatacggc gagcgcacga tacgggtggc cggatgcggg acgagacgca
     4561 ccgcggccag tgcatccggc gggatcgccg tgaacgcatc ggcggtcagc gtcgacagat
     4621 cggccgcgtg atacgcgtcg agccatgcgc gctcgatacg ggcggtatcc gcgagccacg
     4681 gcatcgtgcg cgcgtattcg taaccggcga tgaagtccgg aaagtcgcgc ccgtattcga
     4741 acagcagcgg cgagacgggc agcgtttcgc gtacatggaa gcgcgccatc gcgcggaaga
     4801 actcgacacc gacgatgcgc tgtaccgccg ggtaaatcgc cgcgagcgct tcgatcaggc
     4861 tgaccgtcac gttgttgcgg tagacgtcgt agcggcgggc gacgcgcttg tgcccatgag
     4921 cgatcgcgtc gtccggcgcg ccgatcgacg gattcgtgag gccaggcgcg aacgcgcacg
     4981 cgtaatcgga agcggcagca tcagagcgca tgatcggcta cctccacggg cgatgcgacg
     5041 gcagcgtcca tgatccggcg ggcttcgagc gcctgcgcac gcagcacggg ccagtcggga
     5101 agctggctgt cccattcgac gagtgtcggc accggccctg tgcgggcaat cacgctcgcg
     5161 tacaacgccc atacggggcc ggcaaccggg cgatcgtggc tgtcgatgag aagcggttcg
     5221 tcctcgtcgt cgcgttgttc gctgtgtccg gccagatgga tttcgccgac ctgttcgagc
     5281 ggaaaatttg cgagatagtc ggcggccgaa cagccatgat tggtcgccga cacgaacgcg
     5341 ttattgatgt cgagcaacag gccgcaaccg gtacgcccgg cgaccgccgc aataaattcg
     5401 gtttcgctca tcgtcgacga cgcgaacccg acataggtcg agggattctc gagcagcagc
     5461 ggacgcgcga tcgcctcctg aatctggtcg acgtgcgcgc aaacccgatc aagcgtcgct
     5521 ttcgtatagg gcaagggcag cagatcgttg tagaaggcgc cgccgtgcga tgaccacgca
     5581 agatgctcgg agacgagcac gggttcgtag cgcgcgacga catcacgaaa acgtgcgagg
     5641 tgatgcgcat cgagcggcga tggcccaccg atcgacaggc acacgccgtg cacggaaacc
     5701 ggataggttt cgcgcagcgc gcttagcgct cgatgcggcg gaccgccctt gcccatgtag
     5761 ttttccgcgt gcacctcgaa gaagccgtcc tgcaagccgt tatcgacgat gtccgcaaag
     5821 tgacaaggtt tgaagcttgt gccgaccagc ggtgctgggc aatggaggca gtcacggtgc
     5881 atatatttcg caatactgac agaatcactc atgagcgcct ccggatttcc tcttgtcgat
     5941 gcgctttacg acttcagcgg cgtgagcgag ccgtgaccgc cacccggcac ctggatgctc
     6001 gtgcacgtac cgccctgaac gaacttccac gagttgccct ggaagtcgac ggtcgaggtg
     6061 ccctggcaag tggtgccggg gcccgccgcg cagtcgtttt gccccttcaa cgcgacgcca
     6121 aaacattttt ccttgtgggc ggcgacggcg gcgtcggcct cggctttcgt gagcggcgcg
     6181 gcatgcgcac ccgaggcgac gaggctggcg acggcgccga cgagcagggc ggtatggaac
     6241 gaaagttttg ccgacatggt gttctccgat gattgatgtg gaaggtaccc gttgtgggta
     6301 cgcaagttaa ttcgtgcgat cggcacaaat ggttacagcg gtcgaaattt tttggtaatt
     6361 cccacccaga tcggaccagc gttatgctgg tccgacgatg aaacgctgtc ccgaatgcgc
     6421 gatgagcagg ccctatgaac tgtccgatgg acggtacaag tgtcgtagct gtggcaagaa
     6481 attcagttgg acgtcggtct gggattcagt gcgcctgagc agtcgggaga agacgcgctt
     6541 gctggatgct cgtgtactta cctcggggga agggctatgg actgattccg cgcacgaaaa
     6601 aacggacccg cgccggccgg ctacggagct gtcagatggc cgacgccctc aagaagaccg
     6661 tgactgactt gcctgtcggg ttgtggcgac cattgacgtg ggatcgtggc agggagctgt
     6721 ccgatcatgc ctgcttcact tatcgagtcc ggcgtgaagg tatcacgccg tcgagttgac
     6781 gacgaagcgc tgactggccg gatgatggcc atcgccggat tcacgtgctg ttgcagcagg
     6841 atggctgctt cgccaaccac aagcgcatct gtcgcctgta cagcaaggcg ggactgagcg
     6901 tgcgcaagcg gcggcgcaag cgtattgcgg ctgtcgagcg cacgccgctg ccgttaccaa
     6961 ccggcccgaa tcagagcggg tcgatggact tcgtttctga cgggctggcc tatggtcggc
     7021 ggtttcgata cctgaacgtg gtcggcgact acacgcgcga gtgcttggtt atcgcggtcg
     7081 atacatcgca gccgggccta cgagtgcagc aagtgctcga gcggctcaag gagatgcgag
     7141 gcttgcccgc atccatcacg gtcgacaacg ctctaaatgc aagcggaatg tacaacgcaa
     7201 ggtaaaacgg ggccgcgcac acggcgagat gcagtgcgcg agttgtcaaa gagcgaacga
     7261 cgaccaacca gtggtcttgc gcagcatcgg gcaggcttgc tgaccatagt agacacaaga
     7321 ttcatcgcac agggcgtgat cttcaccgta cctaaaacag catagaagcc ccagcggaag
     7381 gtccgagcat tatctacggg gtcgcctgcg ccccaacggc agccgacaga gggatcgatc
     7441 cactgggtaa accgagttcg aagaactgcc tgtaaggctg gttcttcttg atcatgccgt
     7501 aagccacgcg agccatcttc gctgccacgg cggtcagcgc cttgcgcttg aggtcagcgt
     7561 cgtccggatc tgcatggacg taacgttcat atttcgagcg gaatgagttc tccttcatgc
     7621 gcacggcagc catgcctgcc atccagaagg ccagccgcaa ccgtgcattg ccgcgcttgg
     7681 agagttgctc gcgcccccgc tgggtacccg actgtatctt cgctaggtcg aatccgcagt
     7741 acttcaggaa ctgacggtgg tgaccgaggc ggcgcaggtc ggcggcctcg gcgaggatag
     7801 tcatggcgat caccgagcca atgccaggca gcgtcttcag atgggcgaag tcgatattgt
     7861 cgtgaagctc cgcctcggcg cacgcctcga ttgccgctcg cagtacgttg agctcctggt
     7921 agcgagctta accctgagca ggttccgttg ggtcattaca aaattgcaca ccatcaaagc
     7981 gtcgtgtcga accgccgatt cgaccgagtc agcattcaac gcgccttgaa aactgggtgc
     8041 cgcgcgcatg ccgacagcac gatgcgttcg gactgcgcta agtaatcgtt aagggctgtg
     8101 gcgcactctg cgagcttgcc cgattcgaac aactgcagga tctgcaggtt cagctcgaca
     8161 tatggaccat gtaggaattc tgggtcctgc agcatgccaa aagctaggcg tagttcggcg
     8221 agtacgtggg aaaacatcac gttcaggcgc tcgctgtcgg ccagttccac gatagccata
     8281 tggaactcca tattggcggt ccctacaccc tgccagtcgc cgctgtcgcg gcaacgcagt
     8341 cccatttcta cagcatcgcg caggtgcttt ttggctggat ggctcgggta ggcctgagcg
     8401 atcgcttggc actcgatcag gcggcgcact cggtaaatat caaggatggt tgcgatactg
     8461 gggattgcca cggacacgcc gcggttgggc tcatgcttga gcaggccttc cttggtcagt
     8521 atgcggaaga tttcgcgcaa ggtattgcgc gaaatctgca ggttttcgct tagtgctgct
     8581 tccgacaagc gctgccccgg tgcgaagttg ccgtgcacaa tgctctcgcg aatctgctcc
     8641 gtgacccgct cggctacgtt tttttggtta gaactggatg tcatgtcggc ttgatcggag
     8701 ggcggctagt tccggcatgt ctcgcgcggg aacgatgtcg cattttgttg aacaatatct
     8761 gcgaggttag tgcgaataat tcgacttcac aagtgccttt ggcgacgcta tcaacgtgcc
     8821 attggtgagg caaagcgctg gtcagggggc cttcttggga aacggatctt gctggccact
     8881 tcagtgaaat caagcccggt agcggatttt gtagcgagat gtttgcgatg gtgctcttcg
     8941 agcagcgtga cgagcgtttc gtccgagtgg tggtcccgtt cgttcgcact gacccgcgcc
     9001 gagtttggtg gaggctccga cccttaagga agtggcgcca tgaacgagtc gaagagtttt
     9061 ctgctgaaat cagggagcgt gcagcccgca tggtgcaaga gcatcgcggt agagccttag
     9121 cacggatgcg ctgctggtcg ccacatgccc cttaccctat ggactacgcc ggataaacct
     9181 tgcaagggac agagttcggc gtggcgacta gcatgcggtt gagcatcgtc acgccgatgg
     9241 ctgattcggt acgctgggta tcaagatggc gggctcgcag tcgcgggacc ggagccgatc
     9301 aacgccttgt atcggcccat cgtcgtttcg accagcgctc atcggccata agcagtcgct
     9361 ttctgccaac ctagcttccc gtgcgccttg attgcttcca gatggcgatc gcgctgggtt
     9421 gttgcacgac ctggtgggtc ggagcgccgt cgtatgcgcc atctgcgatg aaccttccga
     9481 tttcgttcgg tatcaggtct agcaatggcg cggcttgaga cggaccgccg tcattctggt
     9541 tggtgcgtgt gcgccacgat caatcccgtg ttcgcatcga ccgccagatg cagcttgcgc
     9601 tagctacggc gggatgtcac cccatgcttt tcctgttgcc attggcccgc gcagtaggct
     9661 ttagtctcgt gccgccaacc agcacgtcca gcggtccgtc gagcaacggc tcgcggccga
     9721 tagcaagcag gtcgctgctt cgcgcgccgg ctcagggcgg tgcaattatg aatcggcagc
     9781 gttagtggtc cgccggggcg actgccgctg cgcgagcgct tcggacgtgg ttcacgtcgt
     9841 taccccccct gcgtgcaggc ccgctttgta cgctggccag ttcgccacgc agcgcgtcat
     9901 cttcgcaatg tgataacggc gagcggcatt gtgcttgtgc ggcgtgcgtc gcgtcaaaaa
     9961 ggttgggctt ccactccatt acccatacct ttcattgacc tatctgtgcg ccaatgtcca
    10021 ccgtctcgca tttccagctt gacaacaccc attaagcgta taccacgatt gagcggcttc
    10081 gttgaattgt tgaacaataa ataaacatcg ttgagctaca tacgataatt gatcaacaat
    10141 atttatagct tacctctgaa gagggccgga gtactggtct gatgaattcc ggcgattgtt
    10201 cttgaccact gattcgaagt tgatcggtct catttacgac ttggcatccg gcatgagtcg
    10261 aaatatcgat gaaaggcagc gcagcgaact ttctccgtgc tttgtcctta ttcatagtga
    10321 gtacaactat gtggcttaaa gaaaccacct aagaagcgcg caagacgctc gttgccgatt
    10381 ttgtcggcta gctgtcctgc tgaccgaggc ggccggcaac gccactcgca tgcgaacgca
    10441 cactgcgagc gcagcatcga ggaacaaatc taggaagaga tgaaattact tatgcctgaa
    10501 tttatagagt ccagcattaa atcgaaatca atcgagttga cgtatcggct tcttccaatg
    10561 agctgcctca tctcggtgac gtgtatttca acaggtcgct ggaggatatt ttgcaaatac
    10621 agacgacaca attaacgaca atgaaaagta agggctacgt tggtgtagca cggcaggcaa
    10681 tcgctcggta tgtgatagaa attcagattt tctatcgacg cattgcaatg ctcagtcaag
    10741 cctgaggtca cgatgcgtat cggctatgcg cgcgtatcga ccgaggaaca atgccttgcg
    10801 ctgcaagagg atgctttgac tcgagcagga tgtgacttga ttttcagcga ccacggcatt
    10861 tcgggcacca atttctgccg acctggcctc gatcaagccc tccaacacct tg
//
