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1.1
1.2
1.3
1.4

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_KB944666.1 (Enterococcus faecalis EnGen0336)

Region | Type | From | To | Similarity Confidence | Most similar known cluster
--- | --- | --- | --- | --- | ---
Region 1.1 | lanthipeptide-class-ii | 90,666 | 113,650 |
Region 1.2 | RiPP-like | 814,354 | 825,397 |
Region 1.3 | terpene-precursor | 1,089,879 | 1,110,760 |
Region 1.4 | cyclic-lactone-autoinducer | 1,875,595 | 1,896,323 |

Region | Type | From | To | Similarity Confidence | Most similar known cluster
--- | --- | --- | --- | --- | ---
Region 1.1 | lanthipeptide-class-ii | 90,666 | 113,650 |
Region 1.2 | RiPP-like | 814,354 | 825,397 |
Region 1.3 | terpene-precursor | 1,089,879 | 1,110,760 |
Region 1.4 | cyclic-lactone-autoinducer | 1,875,595 | 1,896,323 |

No secondary metabolite regions were found in these records:
  NZ_KB944667.1 (Enterococcus faecalis EnGen0336)
  NZ_KB944668.1 (Enterococcus faecalis EnGen0336)

Compact view
NZ_KB944666.1 - Region 1 - lanthipeptide-class-ii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
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Location: 90,666 - 113,650 nt. (total: 22,985 nt) Show pHMM detection rules used
lanthipeptide-class-ii: cds(LANC_like and DUF4135)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
binding site
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
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Gene overview
Tailoring
MIBiG comparison
KnownClusterBlast
SubClusterBlast
Lanthipeptides
TFBS Finder
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
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Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Tailoring functions
Tailoring enzymes detected in this region
Hydrolases: deacetylase
WMS_RS03585: acetylornithine deacetylase

smcogs
  SMCOG1247: acetylornithine deacetylase

Lyases: cyclase
WMS_RS03540: lanthionine synthetase C family protein

smcogs
  SMCOG1070: lanthionine synthetase C family protein

Similar gene clusters
Shows areas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | lanthipeptide-class-ii | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000504.5 |  | 0.56 | ribosomal | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000500.5 |  | 0.51 | ribosomal | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000516.4 |  | 0.49 | ribosomal | geobacillin II | Geobacillus thermodenitrificans
BGC0000527.5 |  | 0.49 | ribosomal | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000623.3 |  | 0.48 | ribosomal | plantaricin W α, plantaricin W β | Lactobacillus plantarum
BGC0000558.5 |  | 0.48 | ribosomal | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0000521.3 |  | 0.48 | ribosomal | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0002698.2 |  | 0.46 | ribosomal | phaeornamide | Pseudophaeobacter arcticus DSM 23566
BGC0000626.3 |  | 0.45 | ribosomal | thuricin | Bacillus thuringiensis
BGC0001210.5 |  | 0.45 | ribosomal | pseudomycoicidin | Bacillus pseudomycoides DSM 12442

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000504.5 |  | 0.56 | ribosomal | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0000500.5 |  | 0.51 | ribosomal | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0000516.4 |  | 0.49 | ribosomal | geobacillin II | Geobacillus thermodenitrificans
BGC0000527.5 |  | 0.49 | ribosomal | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000623.3 |  | 0.48 | ribosomal | plantaricin W α, plantaricin W β | Lactobacillus plantarum
BGC0000558.5 |  | 0.48 | ribosomal | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0000521.3 |  | 0.48 | ribosomal | lacticin 481 | Lactococcus lactis subsp. lactis
BGC0002698.2 |  | 0.46 | ribosomal | phaeornamide | Pseudophaeobacter arcticus DSM 23566
BGC0000626.3 |  | 0.45 | ribosomal | thuricin | Bacillus thuringiensis
BGC0001210.5 |  | 0.45 | ribosomal | pseudomycoicidin | Bacillus pseudomycoides DSM 12442

Similar known clusters from MIBiG 4.0
Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.
Click on an accession to open that entry in the MIBiG database.

No significant matches found.

Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.

No significant matches found.

Lanthipeptide predictions
Shows the possible core peptides for each biosynthetic enzyme.
Includes CompaRiPPson results for any available databases, with a detailed explanation here.

#### Lanthipeptide(s) for WMS_RS03540

WMS_RS03545
Leader:
MDEKQLDSLVGQKFEDLSKEEMNFIAGG
Core:
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
Core with dehydrations:
N D N A R I Dha P Dhb I I L Dha A A Dhb V A Dha A A Dha Dha F V G Dha Y Dhb L Dha A F Dhb K Cys R

#### antiSMASH-DB 4.0 matches for WMS_RS03545

100.0%
NC_021023.1 and 9 others:
NZ_CABGJL010000002.1 Lanthipeptides: FN048_RS03095_lanthipeptide NZ_CABGPX010000017.1 Lanthipeptides: FN189_RS10935_lanthipeptide NZ_CABGTR010000003.1 Lanthipeptides: FN307_RS09565_lanthipeptide NZ_CP097048.1 Lanthipeptides: M2906_RS12940_lanthipeptide NZ_CP116962.1 Lanthipeptides: PO880_RS01555_lanthipeptide NZ_GG670379.1 Lanthipeptides: EFDG_RS12825_lanthipeptide NZ_GL454198.1 Lanthipeptides: HMPREF9500_RS14725_lanthipeptide NZ_KB944666.1 Lanthipeptides: WMS_RS03545_lanthipeptide NZ_KZ845971.1 Lanthipeptides: EB55_RS12315_lanthipeptide
Lanthipeptides: ENT_RS13920_lanthipeptide
1
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
37
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
1
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
37
97.3%
NZ_JTKS01000015.1:
Lanthipeptides: QI17_RS10285_lanthipeptide
1
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
37
N D N A R I S P I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
1
N D N A R I S P K I I L S A A T V A S A A S S F V G S Y T L S A F T K C R
37
43.2%
NZ_CP044545.1:
Lanthipeptides: F7984_RS17855_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A
32
N I P A A T V S A +S F V G S Y ++A
1
N G E I Q P Q G T-P A A T V I S A L A S F V G S Y L V T A
29
with 20 more sequence matches
Only the first 10 are displayed here.
37.8%
NZ_JACSNF010000005.1 and 1 other:
NZ_LMPR01000013.1 Lanthipeptides: ASF99_RS16385_lanthipeptide
Lanthipeptides: KNQ12_RS14670_lanthipeptide
7
S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C
36
S + + ++ V S A S F V G S Y S A K C
1
S T D V D V R S S L V C S A L L S F V G S Y L A S A G L K C
30
34.0%
NZ_CP099547.1:
Lanthipeptides: allorf_0559994_0560212_lanthipeptide
7
S P T I I L S A---A T V A S A A S S F V G S Y T L----S A F T K C R
37
+P T+ S+ A T V+ A S + S+T+ S A+T K C R
9
T P T V T T S S V P C A T V S K A V S G A L V S W T V S F V A S A W T K C R
46
32.4%
NZ_NVMQ01000017.1:
Lanthipeptides: CON32_RS17790_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C
36
+ R +P+ +L+ S F V S Y S A K C
4
D P R T T P S P L L A---------S F V A S Y I A S A E F K C
28
29.7%
NZ_FNYB01000021.1:
Lanthipeptides: BMZ34_RS24355_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C
36
+ R +P+ +L+ S F V S Y S A +C
4
D P R T T P S P L L A---------S F V A S Y I A S A E F R C
28
29.7%
NZ_FNYB01000021.1:
Lanthipeptides: BMZ34_RS24360_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C
36
+ R +P+ +L+ S F V S Y S A +C
4
D P R T T P S P L L A---------S F V A S Y I A S A Q Y R C
28
29.7%
NZ_KB976303.1:
Lanthipeptides: IGY_RS26050_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T K C
36
+ R +P+ +L+ S F V S Y S A +C
4
D P R T T P S P L L A---------S F V A S Y I A S A Q F R C
28
29.7%
NZ_LT800494.1:
Lanthipeptides: B7E07_RS02625_lanthipeptide
3
N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A
32
+ +P T I L++A V + S+F S T++A
5
E P Q A T P T I A L T S A L V G A P V S A F-A S L T I T A
33
29.7%
NZ_NAOJ01000022.1:
Lanthipeptides: B5K31_RS08015_lanthipeptide
16
T V A S A A S S F V G S Y T L S A F T K C
36
T+ S A S F+ S Y S A T+C
10
T I C S A T L S F I A S Y L G S A Q T R C
30
27.0%
NC_003028.3 and 46 others:
NC_003098.1 Lanthipeptides: SPR_RS08865_lanthipeptide NC_011900.1 Lanthipeptides: SPN23F_RS10050_lanthipeptide NC_012466.1 Lanthipeptides: SPJ_RS09635_lanthipeptide NZ_CFDV01000030.1 Lanthipeptides: AQB43_RS08320_lanthipeptide NZ_CFVJ01000005.1 Lanthipeptides: AP598_RS03265_lanthipeptide NZ_CGGJ01000006.1 Lanthipeptides: AP607_RS03205_lanthipeptide NZ_CHVQ01000007.1 Lanthipeptides: AQF85_RS04285_lanthipeptide NZ_CJZM01000008.1 Lanthipeptides: AEE29_RS04155_lanthipeptide NZ_CLHL01000007.1 Lanthipeptides: AE723_RS05750_lanthipeptide NZ_CMIW01000004.1 Lanthipeptides: AD046_RS04075_lanthipeptide NZ_CMKL01000017.1 Lanthipeptides: AD734_RS09110_lanthipeptide NZ_CP035244.1 Lanthipeptides: EQH36_RS09105_lanthipeptide NZ_CP035253.1 Lanthipeptides: EQH27_RS09740_lanthipeptide NZ_CP082820.1 Lanthipeptides: K8B76_RS08865_lanthipeptide NZ_CPPE01000023.1 Lanthipeptides: AD654_RS06875_lanthipeptide NZ_CPRX01000013.1 Lanthipeptides: AEE77_RS05820_lanthipeptide NZ_CPTT01000011.1 Lanthipeptides: AEH42_RS06000_lanthipeptide NZ_CRAW01000006.1 Lanthipeptides: AK725_RS04395_lanthipeptide NZ_CRXO01000010.1 Lanthipeptides: AKU38_RS05260_lanthipeptide NZ_FCRW01000008.1 Lanthipeptides: A1N73_RS07425_lanthipeptide NZ_FDDE01000015.1 Lanthipeptides: A1A23_RS09705_lanthipeptide NZ_FDFR01000008.1 Lanthipeptides: A1O50_RS09320_lanthipeptide NZ_FDGF01000009.1 Lanthipeptides: A0899_RS06595_lanthipeptide NZ_FDQP01000009.1 Lanthipeptides: A1S42_RS08050_lanthipeptide NZ_FECM01000008.1 Lanthipeptides: A1930_RS06475_lanthipeptide NZ_FEEQ01000001.1 Lanthipeptides: A1T31_RS01145_lanthipeptide NZ_FEOS01000003.1 Lanthipeptides: A1178_RS03085_lanthipeptide NZ_FFTU01000009.1 Lanthipeptides: A1K37_RS06335_lanthipeptide NZ_FHJP02000011.1 Lanthipeptides: A1O79_RS07375_lanthipeptide NZ_FHRS02000028.1 Lanthipeptides: A1898_RS09820_lanthipeptide NZ_FIXQ01000010.1 Lanthipeptides: AZ721_RS04790_lanthipeptide NZ_FZDX01000018.1 Lanthipeptides: CFW91_RS09480_lanthipeptide NZ_FZEI01000008.1 Lanthipeptides: CFW58_RS06410_lanthipeptide NZ_JACVHZ010000010.1 Lanthipeptides: ICJ99_RS03880_lanthipeptide NZ_JAGFAE010000038.1 Lanthipeptides: J5E60_RS09005_lanthipeptide NZ_JALDUX010000010.1 Lanthipeptides: M1F92_RS09535_lanthipeptide NZ_JAMYJM010000002.1 Lanthipeptides: NKE69_RS04885_lanthipeptide NZ_LR216014.1 Lanthipeptides: E0F05_RS09385_lanthipeptide NZ_LR216016.1 Lanthipeptides: E0F10_RS10160_lanthipeptide NZ_LR216019.1 Lanthipeptides: E0E94_RS09635_lanthipeptide NZ_LR216027.1 Lanthipeptides: E0E81_RS09205_lanthipeptide NZ_LR216049.1 Lanthipeptides: E0E96_RS09540_lanthipeptide NZ_LR216064.1 Lanthipeptides: E0F31_RS09525_lanthipeptide NZ_LR536843.1 Lanthipeptides: E0F34_RS09600_lanthipeptide NZ_MRXY01000010.1 Lanthipeptides: BTU63_RS06305_lanthipeptide NZ_NANQ01000003.1 Lanthipeptides: B5K28_RS01935_lanthipeptide
Lanthipeptides: SP_RS09795_lanthipeptide
17
V A S A A S S F V G S Y T L S A F T K C
36
+ S A S F+ S Y S A T+C
11
I C S A T L S F I A S Y L G S A Q T R C
30
27.0%
NZ_CP041405.1:
Lanthipeptides: FLT43_RS14405_lanthipeptide
17
V A S A A S S F V G S Y T L S A F T K C
36
V A S+V S Y S A K C
12
V C G A G I S Y V A S Y L A S A A F K C
31
WMS_RS03550
Leader:
MEAEKIVGM
Core:
Q F E D L S K E E M N F I A G G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
Core with dehydrations:
Q F E D L Dha K E E M N F I A G G N N N A R I Dha P Dhb I V Dhb P V Dhb P Y Dhb Dha Y V A Dha A A G Dha A A L Dha A V Dha G L V Dha Y Dhb K K Cys F

#### antiSMASH-DB 4.0 matches for WMS_RS03550

100.0%
NC_021023.1 and 10 others:
NZ_CABGJL010000002.1 Lanthipeptides: FN048_RS03100_lanthipeptide NZ_CABGPX010000017.1 Lanthipeptides: FN189_RS10930_lanthipeptide NZ_CABGTR010000003.1 Lanthipeptides: FN307_RS09560_lanthipeptide NZ_CP097048.1 Lanthipeptides: M2906_RS12945_lanthipeptide NZ_CP116962.1 Lanthipeptides: PO880_RS01550_lanthipeptide NZ_GG670379.1 Lanthipeptides: EFDG_RS12820_lanthipeptide NZ_GL454198.1 Lanthipeptides: HMPREF9500_RS14730_lanthipeptide NZ_JTKS01000015.1 Lanthipeptides: QI17_RS10290_lanthipeptide NZ_KB944666.1 Lanthipeptides: WMS_RS03550_lanthipeptide NZ_KZ845971.1 Lanthipeptides: EB55_RS12320_lanthipeptide
Lanthipeptides: ENT_RS13925_lanthipeptide
1
Q F E D L S K E E M N F I A G G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
Q F E D L S K E E M N F I A G G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
1
Q F E D L S K E E M N F I A G G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
35.0%
NZ_GG730336.1:
Lanthipeptides: SAUG_RS08755_lanthipeptide
16
G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
G + +P T I +P T P Y ++ A +S A V S G L V S Y T K C
2
G T V E P Q A T P T I A S P F T P Y A I E I S I G A---T V S A V S G L V S Y T K D C L
43
30.0%
NZ_FPCC01000026.1:
Lanthipeptides: BM377_RS12905_lanthipeptide
2
F E D L S K E E M N F I A G-G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S
50
F E D L+ E+M G G+ +A +P I+ P S A + A L S +S
2
F E D L N T E D M Q N T Q G A G D V D A E T T P V I M----P I C S P S A V V N P T L A L S L I S
47
with 25 more sequence matches
Only the first 10 are displayed here.
28.3%
NZ_FPCC01000026.1:
Lanthipeptides: BM377_RS12900_lanthipeptide
2
F E D L S K E E M-N F I A G G N N N A R I S P T I--V T P V T P Y T S
35
F E D L+ E+M N G G+ N A T I +T V P S
2
F E D L N T E D M Q N T Q G G G D V N A E T I V T I S N L T L V G P I V S
38
28.3%
NZ_JACSPZ010000014.1:
Lanthipeptides: H9635_RS18390_lanthipeptide
30
V T P Y T S Y V A S A A G S A------A L S A V S G L V S Y T K K C F
60
V P+T+ + S A A + A+S A+S G L V S Y K C
4
V E P H T T P I L S A A T K S S K K C L G A I S A I S G L V S Y N K D C L
40
27.4%
NZ_CP011152.1 and 1 other:
NZ_CP011152.1 Lanthipeptides: WR47_RS28810_lanthipeptide
Lanthipeptides: WR47_RS28810_lanthipeptide
2
F E D L S K E E M-N F I A G G N N N A R I S P T-I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C
59
E++ E+ N + G+ A S I+T P T P S G A + T K+C
6
L E E I Q G N E L L N A V G A G D V Q A N T S T V Q I L T P R T P I I S N T L G N K G H A C--------T I T K E C
57
26.7%
NC_021023.1 and 9 others:
NZ_CABGJL010000002.1 Lanthipeptides: FN048_RS03095_lanthipeptide NZ_CABGPX010000017.1 Lanthipeptides: FN189_RS10935_lanthipeptide NZ_CABGTR010000003.1 Lanthipeptides: FN307_RS09565_lanthipeptide NZ_CP097048.1 Lanthipeptides: M2906_RS12940_lanthipeptide NZ_CP116962.1 Lanthipeptides: PO880_RS01555_lanthipeptide NZ_GG670379.1 Lanthipeptides: EFDG_RS12825_lanthipeptide NZ_GL454198.1 Lanthipeptides: HMPREF9500_RS14725_lanthipeptide NZ_KB944666.1 Lanthipeptides: WMS_RS03545_lanthipeptide NZ_KZ845971.1 Lanthipeptides: EB55_RS12315_lanthipeptide
Lanthipeptides: ENT_RS13920_lanthipeptide
17
N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S
50
N+N A R I S P T I+ S +S G S L S A +
1
N D N A R I S P T I I L S A A T V A S A A S S F V G S Y T L S A F T
34
26.7%
NZ_BMSZ01000006.1 and 4 others:
NZ_BMSZ01000006.1 Lanthipeptides: IE135_RS12790_lanthipeptide NZ_CP021707.1 Lanthipeptides: CCZ36_RS18195_lanthipeptide NZ_LZRD01000017.1 Lanthipeptides: A3Q37_RS19730_lanthipeptide NZ_LZRD01000017.1 Lanthipeptides: A3Q37_RS19730_lanthipeptide
Lanthipeptides: IE135_RS12790_lanthipeptide
20
A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C
59
A I+P T I V P T T+ + A S A A+ T K+C
6
A G I T P T I V-P A T A V T T V I V G A--S A A M Q G G C P T S G C T K R C
42
26.7%
NZ_CP026035.1:
Lanthipeptides: C2H96_RS00305_lanthipeptide
31
T P Y T S Y V A S A A G-------S A A L S A V S G L V S Y T K K C F
60
T P S V S A G S S A+S G+V S+ K C
8
T P A V S A V L S A V G R S T R L C I S G I G S A I S G I V S H N K D C L
44
26.7%
NZ_FPCC01000026.1:
Lanthipeptides: BM377_RS12915_lanthipeptide
2
F E D L S K E E M N F I A G G N N N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
+E D L+ E+M G + + T+ +T A S +S G +S K K C
2
Y E D L N T E D M Q N T Q G A G D T E--A E T V S L A I T-----------G A I A S V I S G A I S L-K K C V
46
26.7%
NZ_KN125582.1:
Lanthipeptides: DJ91_RS27550_lanthipeptide
19
N A R I S P T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
+ R P T++ S ++S A ++ +S A+S G L V S Y K C
4
D T R T H P T V I V-----V S R I S S A K C A S T I S A I S G L V S Y N K D C L
40
25.0%
NZ_CP011152.1 and 3 others:
NZ_CP011152.1 Lanthipeptides: WR47_RS28830_lanthipeptide NZ_CP011152.1 Lanthipeptides: WR47_RS28835_lanthipeptide NZ_CP011152.1 Lanthipeptides: WR47_RS28830_lanthipeptide
Lanthipeptides: WR47_RS28835_lanthipeptide
27
V T P-V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C
59
V T P T P + +A+A A G A +S A V + + K C
3
V T P Q A T P T V T I L A T A A G G A V I S A V L P T L K C S S K C
36
25.0%
NZ_CP094446.1:
Lanthipeptides: L3476_RS23825_lanthipeptide
25
T I V T P V T P Y T S Y V A S A A G S A A L S A V S G L V S Y T K K C F
60
T I V+ V T + S A G S A +S G++S+ K C
11
T I V S A V T R S S K P C I S A I G S A----I S G I I S H N K D C L
42

#### MIBiG 4.0 matches for WMS_RS03550

11.7%
BGC0002130.3 (QKI29070.1):
Lanthipeptide: cacaoidin
29
P V T P Y T S Y V A S A A G S A A L
46
P T Y S A S + +A+
4
P C T I Y A S V S A S I S A T A S W
21
6.7%
BGC0000582.4 (ADR72962.1):
Linaridin: cypemycin
28
T P V T P
32
T P T P
2
T P A T P
6
allorf_0096922_0097065
Leader:
MLLLIKTYNYLHSYFILKKYGPVNTSLVHIGGA
Core:
P R N I C T E N S D S D Y L
Core with dehydrations:
P R N I Cys Dhb E N Dha D Dha D Y L

#### antiSMASH-DB 4.0 matches for allorf_0096922_0097065

100.0%
NC_021023.1 and 9 others:
NZ_CABGJL010000002.1 Lanthipeptides: allorf_195639_195782_lanthipeptide NZ_CABGPX010000017.1 Lanthipeptides: allorf_61913_62056_lanthipeptide NZ_CABGTR010000003.1 Lanthipeptides: allorf_127304_127447_lanthipeptide NZ_CP097048.1 Lanthipeptides: allorf_2681863_2682006_lanthipeptide NZ_CP116962.1 Lanthipeptides: allorf_0340612_0340755_lanthipeptide NZ_GL454198.1 Lanthipeptides: allorf_096858_097001_lanthipeptide NZ_JTKS01000015.1 Lanthipeptides: allorf_208570_208713_lanthipeptide NZ_KB944666.1 Lanthipeptides: allorf_0096922_0097065_lanthipeptide NZ_KZ845971.1 Lanthipeptides: allorf_2372960_2373103_lanthipeptide
Lanthipeptides: allorf_2915554_2915697_lanthipeptide
1
P R N I C T E N S D S D Y L
14
P R N I C T E N S D S D Y L
1
P R N I C T E N S D S D Y L
14
22.2%
NZ_CP114875.1:
Lanthipeptides: O4Z47_RS14375_lanthipeptide
3
N I C T E N S D S D Y L
14
+I C T S+ D+L
10
D I C T L T S E C D H L
21

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Transcription Factor Binding Sites
Detailed information for Transcription Factor Binding Site hits, including surrounding genes where applicable.
The strand of the match is shown by an arrow underneath the match.
Detailed documentation is available here.
Binding sites found:
VqsM
Description: Regulator of quorum-sensing signalling systems
Species: Pseudomonas aeruginosa PAO1
Score: 19.00 out of 20.47
Confidence: strong
LexA variant 2
Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 22.72 out of 24.78
Confidence: strong
MogR
Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 24.16 out of 26.06
Confidence: strong
MogR
Description: Repressor of flagellar motility genes
Species: Listeria monocytogenes EGD-e
Score: 23.36 out of 26.06
Confidence: medium
Additional weak hits (2):
HipB
Description: Bacterial antitoxin HipB
Species: Escherichia coli BL21(DE3)
Score: 24.35 out of 33.73
Confidence: weak
LexA variant 1
Description: Repressor of DNA damage response
Species: Streptomyces coelicolor
Score: 21.58 out of 29.65
Confidence: weak
Lanthipeptides
TFBS Finder
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

WMS_RS03545 - Class II
  Cleavage pHMM score: -0.50
  RODEO score: 0
  Monoisotopic mass: 3591.9 Da
  Molecular weight: 3594.0 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    3612.0 Da N = 1
    3630.1 Da N = 2
    3648.1 Da N = 3
    3666.1 Da N = 4
    3684.1 Da N = 5
    3702.1 Da N = 6
    3720.2 Da N = 7
    3738.2 Da N = 8
    3756.2 Da N = 9
    3774.2 Da N = 10
WMS_RS03550 - Class II
  Cleavage pHMM score: 1.60
  RODEO score: 0
  Monoisotopic mass: 6038.1 Da
  Molecular weight: 6041.7 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    6059.7 Da N = 1
    6077.8 Da N = 2
    6095.8 Da N = 3
    6113.8 Da N = 4
    6131.8 Da N = 5
    6149.8 Da N = 6
    6167.9 Da N = 7
    6185.9 Da N = 8
    6203.9 Da N = 9
    6221.9 Da N = 10
    6239.9 Da N = 11
    6258.0 Da N = 12
allorf_0096922_0097065 - Class II
  Cleavage pHMM score: -4.70
  RODEO score: 0
  Monoisotopic mass: 1571.7 Da
  Molecular weight: 1572.6 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    1590.7 Da N = 1
    1608.7 Da N = 2

TFBS definitions
Shows descriptions for Transcription Factor Binding Site models

Regulator | Description
--- | ---
LexA variant 2 | Repressor of DNA damage response
MogR | Repressor of flagellar motility genes
VqsM | Regulator of quorum-sensing signalling systems

NZ_KB944666.1 - Region 2 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 814,354 - 825,397 nt. (total: 11,044 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
binding site
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
Tailoring
MIBiG comparison
KnownClusterBlast
SubClusterBlast
TFBS Finder
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Tailoring functions
Tailoring enzymes detected in this region
Transferases: acetyltransferase
WMS_RS06970: Chloramphenicol acetyltransferase

smcogs
  SMCOG1156: Chloramphenicol acetyltransferase

Similar gene clusters
Shows areas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001510.5 |  | 0.31 | other (other) | anisomycin | Streptomyces hygrospinosus
BGC0002254.3 |  | 0.31 | PKS | notoamide F, (+)-semivioxanthin, waikikiamide B, waikikiamide C, notoamide A, waikikiamide A | Aspergillus sp. FM242
BGC0000770.4 |  | 0.31 | saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000762.3 |  | 0.27 | saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae
BGC0001580.3 |  | 0.26 | PKS | ebelactone | Kitasatospora aburaviensis
BGC0000806.5 |  | 0.26 | saccharide | phosphonoglycans | Glycomyces sp. NRRL B-16210
BGC0000298.5 |  | 0.25 | NRPS | aeruginosin 98-A, aeruginosin 98-B, aeruginosin 98-C | Microcystis aeruginosa NIES-98
BGC0000758.4 |  | 0.24 | saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0001412.3 |  | 0.24 | saccharide | polysaccharide C | Bacteroides fragilis
BGC0002550.2 |  | 0.21 | PKS | lobophorin CR4 | Streptomyces olivaceus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001510.5 |  | 0.31 | other (other) | anisomycin | Streptomyces hygrospinosus
BGC0002254.3 |  | 0.31 | PKS | notoamide F, (+)-semivioxanthin, waikikiamide B, waikikiamide C, notoamide A, waikikiamide A | Aspergillus sp. FM242
BGC0000770.4 |  | 0.31 | saccharide | lipo-oligosaccharide | Campylobacter jejuni
BGC0000762.3 |  | 0.27 | saccharide | exopolysaccharide | Rhizobium leguminosarum bv. viciae
BGC0001580.3 |  | 0.26 | PKS | ebelactone | Kitasatospora aburaviensis
BGC0000806.5 |  | 0.26 | saccharide | phosphonoglycans | Glycomyces sp. NRRL B-16210
BGC0000298.5 |  | 0.25 | NRPS | aeruginosin 98-A, aeruginosin 98-B, aeruginosin 98-C | Microcystis aeruginosa NIES-98
BGC0000758.4 |  | 0.24 | saccharide | capsular polysaccharide | Staphylococcus aureus
BGC0001412.3 |  | 0.24 | saccharide | polysaccharide C | Bacteroides fragilis
BGC0002550.2 |  | 0.21 | PKS | lobophorin CR4 | Streptomyces olivaceus

Similar known clusters from MIBiG 4.0
Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.
Click on an accession to open that entry in the MIBiG database.

No significant matches found.

Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.

No significant matches found.

Transcription Factor Binding Sites
Detailed information for Transcription Factor Binding Site hits, including surrounding genes where applicable.
The strand of the match is shown by an arrow underneath the match.
Detailed documentation is available here.
Binding sites found:
AfsR
Description: Pleiotropic regulatory for antibiotic production
Species: Streptomyces coelicolor
Score: 18.76 out of 23.05
Confidence: medium
Additional weak hits (1):
LexA variant 2
Description: Repressor of DNA damage response
Species: Bacillus subtilis subsp. subtilis str. 168
Score: 20.02 out of 24.78
Confidence: weak
TFBS Finder
TFBS definitions
Shows descriptions for Transcription Factor Binding Site models

Regulator | Description
--- | ---
AfsR | Pleiotropic regulatory for antibiotic production

NZ_KB944666.1 - Region 3 - terpene-precursor
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,089,879 - 1,110,760 nt. (total: 20,882 nt) Show pHMM detection rules used
terpene-precursor: (PT_FPPS_like and not PT_HPP)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
binding site
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
Tailoring
MIBiG comparison
KnownClusterBlast
SubClusterBlast
Terpene
TFBS Finder
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Tailoring functions
Tailoring enzymes detected in this region
Hydrolases: peptidase
WMS_RS08380: methionine aminopeptidase

smcogs
  SMCOG1172: methionine aminopeptidase

Ligases: synthetase
WMS_RS08415: Polyprenyl synthetase

smcogs
  SMCOG1182: Polyprenyl synthetase

Similar gene clusters
Shows areas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene-precursor | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002397.2 |  | 0.47 | terpene | astallatene | Arabidopsis thaliana
BGC0002400.2 |  | 0.44 | terpene | boleracene | Brassica oleracea var. oleracea
BGC0002398.2 |  | 0.39 | terpene | (-)-ent-quiannulatene | Arabidopsis thaliana
BGC0002309.2 |  | 0.36 | terpene | cattleyene | Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0000639.3 |  | 0.34 | terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000642.3 |  | 0.34 | terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0001605.3 |  | 0.32 | terpene | gibberellin | Sinorhizobium fredii NGR234
BGC0001075.5 |  | 0.31 | PKS, terpene | aurachin RE | Rhodococcus erythropolis
BGC0001456.3 |  | 0.30 | terpene | isorenieratene | Streptomyces argillaceus
BGC0000286.3 |  | 0.30 | PKS | viguiepinol | Streptomyces sp. KO-3988

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0002397.2 |  | 0.47 | terpene | astallatene | Arabidopsis thaliana
BGC0002400.2 |  | 0.44 | terpene | boleracene | Brassica oleracea var. oleracea
BGC0002398.2 |  | 0.39 | terpene | (-)-ent-quiannulatene | Arabidopsis thaliana
BGC0002309.2 |  | 0.36 | terpene | cattleyene | Streptomyces cattleya NRRL 8057 = DSM 46488
BGC0000639.3 |  | 0.34 | terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000642.3 |  | 0.34 | terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0001605.3 |  | 0.32 | terpene | gibberellin | Sinorhizobium fredii NGR234
BGC0001075.5 |  | 0.31 | PKS, terpene | aurachin RE | Rhodococcus erythropolis
BGC0001456.3 |  | 0.30 | terpene | isorenieratene | Streptomyces argillaceus
BGC0000286.3 |  | 0.30 | PKS | viguiepinol | Streptomyces sp. KO-3988

Similar known clusters from MIBiG 4.0
Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.
Click on an accession to open that entry in the MIBiG database.

No significant matches found.

Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.

No significant matches found.

Detailed terpene predictions
Detailed information for terpene domains. Shows possible products of a terpene cluster and lists the subtype and expected reactions for each terpene-related domain.
Product predictions:

Class | Subclass | Product name | Chain length | Initial cyclisations | Functional groups
--- | --- | --- | --- | --- | ---
sesquiterpene precursor |  | FPP | C15 | acyclic | PP

Genes with terpene domains:
WMS_RS08415: PT_FPPS_like
Domain 1 (29 - 276): Prenyltransferase; Farnesyl diphosphate synthase like
Subtype: Farnesyl diphosphate synthase, bacterial

Reactions:
  IPP, DMAPP → FPP

Transcription Factor Binding Sites
Detailed information for Transcription Factor Binding Site hits, including surrounding genes where applicable.
The strand of the match is shown by an arrow underneath the match.
Detailed documentation is available here.
Binding sites found:
CodY
Description: Regulator of stationary phase and virulence in Gram-positive bacteria
Species: Bacillus, Lactococcus & Streptococcus sp.
Score: 22.38 out of 27.78
Confidence: medium
ZuR variant 1
Description: Zinc-responsive repressor
Species: Streptomyces coelicolor
Score: 21.87 out of 28.19
Confidence: medium
Additional weak hits (1):
ZuR variant 2
Description: Zinc-responsive repressor
Species: Pseudomonas protegens Pf-5
Score: 25.47 out of 33.14
Confidence: weak
Terpene
TFBS Finder
Glossary
Glossary showing acronyms and their full names.

Acronym | Full name
--- | ---
DMAPP | Dimethylallyl diphosphate
FPP | Farnesyl diphosphate
IPP | Isopentenyl diphosphate
PP | Diphosphate

TFBS definitions
Shows descriptions for Transcription Factor Binding Site models

Regulator | Description
--- | ---
CodY | Regulator of stationary phase and virulence in Gram-positive bacteria
ZuR variant 1 | Zinc-responsive repressor

NZ_KB944666.1 - Region 4 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1,875,595 - 1,896,323 nt. (total: 20,729 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
binding site
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
Tailoring
MIBiG comparison
KnownClusterBlast
SubClusterBlast
TFBS Finder
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Tailoring functions
Tailoring enzymes detected in this region
No tailoring functions detected.
Similar gene clusters
Shows areas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.3 |  | 0.41 | ribosomal | enterocin NKR-5-3B | Enterococcus faecium
BGC0001948.3 |  | 0.37 | other (other) | naseseazine C, C3-aryl pyrroloindolines | Streptomyces sp.
BGC0000046.4 |  | 0.35 | PKS | depudecin | Alternaria brassicicola
BGC0002227.3 |  | 0.31 | NRPS | AKML B, AKML D, AKML A, AKML C | Aspergillus luchuensis IFO 4308
BGC0002667.2 |  | 0.30 | ribosomal | estericin A | Clostridium estertheticum
BGC0001246.3 |  | 0.30 | PKS | trans-resorcylide | Sarocladium zeae
BGC0000688.4 |  | 0.29 | terpene | copalyl diphosphate | Diaporthe amygdali
BGC0001954.2 |  | 0.28 | NRPS, PKS | wortmanamide A, wortmanamide B | Talaromyces wortmannii
BGC0001366.5 |  | 0.27 | PKS | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0002058.3 |  | 0.27 | NRPS, PKS | mutanocyclin | Streptococcus mutans B04Sm5

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001291.3 |  | 0.41 | ribosomal | enterocin NKR-5-3B | Enterococcus faecium
BGC0001948.3 |  | 0.37 | other (other) | naseseazine C, C3-aryl pyrroloindolines | Streptomyces sp.
BGC0000046.4 |  | 0.35 | PKS | depudecin | Alternaria brassicicola
BGC0002227.3 |  | 0.31 | NRPS | AKML B, AKML D, AKML A, AKML C | Aspergillus luchuensis IFO 4308
BGC0002667.2 |  | 0.30 | ribosomal | estericin A | Clostridium estertheticum
BGC0001246.3 |  | 0.30 | PKS | trans-resorcylide | Sarocladium zeae
BGC0000688.4 |  | 0.29 | terpene | copalyl diphosphate | Diaporthe amygdali
BGC0001954.2 |  | 0.28 | NRPS, PKS | wortmanamide A, wortmanamide B | Talaromyces wortmannii
BGC0001366.5 |  | 0.27 | PKS | BE-24566B, zunyimycin A | Streptomyces sp. FJS31-2
BGC0002058.3 |  | 0.27 | NRPS, PKS | mutanocyclin | Streptococcus mutans B04Sm5

Similar known clusters from MIBiG 4.0
Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.
Click on an accession to open that entry in the MIBiG database.

No significant matches found.

Similar subclusters
Shows sub-cluster units that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.

No significant matches found.

Transcription Factor Binding Sites
Detailed information for Transcription Factor Binding Site hits, including surrounding genes where applicable.
The strand of the match is shown by an arrow underneath the match.
Detailed documentation is available here.
Binding sites found:
ColR
Description: Phenol-responsive regulator
Species: Pseudomonas putida KT2440
Score: 28.99 out of 30.25
Confidence: strong
IolR
Description: Regulator of the inositol catabolism
Species: Caulobacter crescentus CB15
Score: 19.08 out of 23.79
Confidence: medium
CRP
Description: Cyclic AMP receptor protein
Species: Escherichia coli str. K-12 substr. MG1655
Score: 17.55 out of 19.26
Confidence: medium
IolR
Description: Regulator of the inositol catabolism
Species: Caulobacter crescentus CB15
Score: 19.50 out of 23.79
Confidence: medium
TFBS Finder
TFBS definitions
Shows descriptions for Transcription Factor Binding Site models

Regulator | Description
--- | ---
CRP | Cyclic AMP receptor protein
ColR | Phenol-responsive regulator
IolR | Regulator of the inositol catabolism